Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0200 ATGGATACCTTGTTTCGGCTTGTCAGTTTTCAGTCTCAACCTTCTGATCCTCAATCTCTCAACAACTCCTCTAGCAGCTCTAGATCCTCCACACAAAACAACAACAACAACAACTACAACTTCCACCATCATCATCACTACCACCACCAGCAAGAAGACGAAGAATGCTTCAACATTTTCATGGATGAAGAAGACTTGTCCTCCTCTTCTCCTAAACACTACTATCCTTATCATCACCACCCGTCTTCCTCCACCCCCACCGCCGCCACCCCCACCACTGCTACTGCTACTACTTTCACAACCACCACTCCCACCACTTCTGATTTCTCCTTCTCCCTCTCCCCCACCACAACTGACCTTCACAACTTTGAATTCTCCGGCCGATGGGCTCACGATCTCCTCCTTGAGACTGCTCGTGCCGTCGCCGACAAGAACAGCGCTCGTGTCCAACAGTTGATTTGGATGCTCAACGAACTTGCTAGTCCTTATGGTGATACTGATCAGAAGCTCGCCGCTTACTTCCTTCAGGCTCTGTTTAGTCGGGTCACCGACTCCGGGGACCGGACCTACCGTACGTTGGCCACCGCGTCGGAGAAAACATGCTCTTTTGAGTCTACAAGGAAGATGGTGTTGAAGTTCCAAGAGGTTAGCCCTTGGACTACTTTCGGCCACGTCGCTTCCAATGGAGCCATCTTGGAGGCCTTAGAAGGTGAGCCAAAGTTGCACATAGTTGATATTAGCGATACGTATTGCACCCAGTGGCCTACTCTTCTTGAAGCCTTGGCCACTCGCAGCGATGACACTCCTCACCTCCGGTTAACCACGGTGGTTAGCCGCCGAGCCAGTGGCTCCATCGCGGCGGTTCAGAAAGTCATGAAGGAGATAGGGACTAGAATGGAGAAATTCGCTCGGCTCATGGGTGTTCCCTTTAAATTCAGCGTTATTCATCACGCGGGTGATCTCTCAGACTTTAATTTCTCGGAATTAGATATTAAAGACGACGAGGCTCTCGCCATTAACTGTGTGAACGCGCTGCATTCCATCGCGGCCTTCGGTAATAACCGGGACATGTTGATATCCTCGTTTCAGAGATTACAACCTAGGATAGTCACTGTGGTGGAAGAGGAAGCAGATCTTGATGTTGGATTTCATGGGTTTGAATTTGTACGAGGTTTCCAAGAATGCTTGAGGTGGTTTAGGGTTTATTTCGAGGCACTGGAGGAGAGCTTCCCCCGAACAAGCAACGAGCGTTTGATGCTTGAGAGAGCGGCAGGACGAGCCATCGTTGAGTTGGTGGCTTGTGATCAGTCGCAGTCTGTAGAACGGCGGGAGACGGCTGTGAGATGGTCGCAGCGGCTGCATGGTAGTGGGTTCAACGCAGTGCCGTTCAGTGATGAGGTCTCCGACGACGTGAGAGCGCTGTTGAGGAGGTATAAGGAGGGTTGGTCAATAACACATTGCTCCGACGCCGGAATATTCTTGGCTTGGAAAGAACAGCCGGTGGTGTGGGCCAGTGCATGGAGGCCTTGA 1530 0.5124 MDTLFRLVSFQSQPSDPQSLNNSSSSSRSSTQNNNNNNYNFHHHHHYHHQQEDEECFNIFMDEEDLSSSSPKHYYPYHHHPSSSTPTAATPTTATATTFTTTTPTTSDFSFSLSPTTTDLHNFEFSGRWAHDLLLETARAVADKNSARVQQLIWMLNELASPYGDTDQKLAAYFLQALFSRVTDSGDRTYRTLATASEKTCSFESTRKMVLKFQEVSPWTTFGHVASNGAILEALEGEPKLHIVDISDTYCTQWPTLLEALATRSDDTPHLRLTTVVSRRASGSIAAVQKVMKEIGTRMEKFARLMGVPFKFSVIHHAGDLSDFNFSELDIKDDEALAINCVNALHSIAAFGNNRDMLISSFQRLQPRIVTVVEEEADLDVGFHGFEFVRGFQECLRWFRVYFEALEESFPRTSNERLMLERAAGRAIVELVACDQSQSVERRETAVRWSQRLHGSGFNAVPFSDEVSDDVRALLRRYKEGWSITHCSDAGIFLAWKEQPVVWASAWRP 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0200 509 MobiDBLite consensus disorder prediction 8 47 - -
Lele53g0200 509 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 90 498 IPR005202 -
Lele53g0200 509 Pfam GRAS domain family 132 508 IPR005202 -
Lele53g0200 509 MobiDBLite consensus disorder prediction 71 91 - -
Lele53g0200 509 MobiDBLite consensus disorder prediction 8 40 - -
Lele53g0200 509 ProSiteProfiles GRAS family profile. 121 508 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0200 Lele-ChrLele53 1674113 1675642 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0200 1 509 GRAS Transcription Factor Family AT4G37650 62.430 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lele53g0200 GRAS 1e-107 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele51g0375 51 2155181 2158460 Lele53g0200 53 1674113 1675642 CCT
Lele52g0390 52 2282890 2288594 Lele53g0200 53 1674113 1675642 CCT
Lele53g0200 53 1674113 1675642 Lele55g1285 55 19329123 19330844 hybridization
Lele53g0200 53 1674113 1675642 Lele56g1234 56 15683665 15685179 hybridization