Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0196 ATGAAGTACAATCCGAGAGTTTCAAGCTCTCGCCGGAAGAATCGCAAGGCCCACTTTTCGGCGCCGTCGAGTGTTCGCCGTGTGATTATGAGCGCGCCGCTCTCAAACGAACTCCGCTCAAAGTACAACGTTCGATCTATGCCTATTCGCAAGGACGATGAGGTTCAGGTTGTTCGAGGTACCTACAAGGGCCGCGACGGCAAGGTCGTGCAAGTTTACCGTCGAAAATGGGTCATCCACATCGAGCGGATCACCCGTGAGAAGGTAAATGGATCAACCGTCAACGTTGGGATCAATCCATCGAAAGTTGTGATCACGAAGCTGAGGCTTGATAAGGATCGTAAGTCATTGCTTGATCGTAAGGCCAAGGGTCGTGCCGCAGCTGACAAGGACAAGGGAACCAAATTCACTGCCGAGGACATTATGCAAAGTGTTGATTAG 441 0.5125 MKYNPRVSSSRRKNRKAHFSAPSSVRRVIMSAPLSNELRSKYNVRSMPIRKDDEVQVVRGTYKGRDGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDRKAKGRAAADKDKGTKFTAEDIMQSVD 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0196 146 ProSitePatterns Ribosomal protein L24 signature. 52 69 IPR005825 GO:0003735|GO:0005840|GO:0006412
Lele53g0196 146 Pfam KOW motif 51 82 IPR005824 -
Lele53g0196 146 MobiDBLite consensus disorder prediction 1 22 - -
Lele53g0196 146 PANTHER 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER 1 142 IPR005756 GO:0003735|GO:0006412|GO:0015934
Lele53g0196 146 TIGRFAM rplX_A_E: ribosomal protein uL24 8 122 IPR005756 GO:0003735|GO:0006412|GO:0015934
Lele53g0196 146 SMART kow_9 48 75 IPR005824 -
Lele53g0196 146 MobiDBLite consensus disorder prediction 1 20 - -
Lele53g0196 146 FunFam 60S ribosomal protein L26 1 144 - -
Lele53g0196 146 Hamap 50S ribosomal protein L24 [rplX]. 9 121 IPR005756 GO:0003735|GO:0006412|GO:0015934
Lele53g0196 146 Pfam Ribosomal proteins L26 eukaryotic, L24P archaeal 8 121 IPR005756 GO:0003735|GO:0006412|GO:0015934
Lele53g0196 146 Gene3D - 1 144 IPR014722 -
Lele53g0196 146 CDD KOW_RPL26 52 105 IPR041988 GO:0003723
Lele53g0196 146 SUPERFAMILY Translation proteins SH3-like domain 8 125 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0196 Lele-ChrLele53 1647829 1648269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0196 1 146 Cytoplasmic Ribosomal Protein Gene Family AT3G49910 88.356 1.98e-94 267