Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0189 ATGACTGTCGTCAAAACATGCATTTGCATGAACATCAAGGAACTGAACAATGATAACAACATCGACGAGTTACCGGATTTTGCTATGAAAATGTTATTAGAATCGATATTTAATAATACTGGAGAAGTTGTGGCTAAAAGAAAAGGCAGAAGGAAACGTGAGATTCTAGGGACGCCAACAGAAGCTGCAATATTGGAATATGGTTTATCACTGGGACAGGATTTTCATAAAGAGAGAAAAGCATGTAAGATTGTGAAAGTTGAGCCATTTAACTCAGAAAAGAAAAGGATGGGCGTAGTTTTAGAGCTGCCTGAAGGAAATCTTCGTGCTCATTCTAAAGTTGCTTCTGAGATCGTTTTGGCTGCTTGTGACAAAGGGATTAATTCAAACGGAGATGTTGTATCACTTGATGCAGAGAAAAGTAATTATCTAAAAGATACAATTTACTCATTTGCTCGTGAGGCACTTAGAACTCTATGCCTTGCTTGTATGGTGTTGGAAAATAGATTCTCTGCTGACGATTCTATTCCTACTTCTGGATATACTTGTATTGGGATCGTTGGTATCAAAGATCCCGTTCGTCCTGGTGTGAAGGAATCCGTTGCAACCTGTCGTAAAGCGGGTATTACAGTTAGAATGGTTACAGGTGATAATAATAATACTGCTAAAGCTATAACCATAGAATGTGGGATTTTAACAGACAATGGCATGGACATAGAAGGCCCAGATTTCAGAGAGAAGACTCATGAGGAAATGTTTGAACTGATTCCTAAAATTCAGGTTATGGCTAGATCGTCCCCGTTTGATAAGCATACTTTAGTGAAACAACTGCGTACTACGTTTGAAGAAGTTGTAGCCGTAACTGGTGATGGAGAAAATGACGCTCCTGCCCTTCACGAGGCAGACATTGGTCTTACAATGGGCATTGCTGGAACTGAGGTTGCTAAAGAAAGCGCTGATGTCATAATTCTGGATGATAATTTCTCTACTATAGTGACAGTGGCAAAATGGAGACGTTCAGTTTTCAACGAGATAAGTTCAAGTGAGATGGAGGAAATAGATGTATTTAAAGGCATATTGGATAATCATGTTTTCGTGGCTGTCATAAGTGCATGCCCATTGCAGCCGCTTAAAGATGATCCCAGTCTAAACCAATCTCCAGAATCACATTAA 1173 0.3947 MTVVKTCICMNIKELNNDNNIDELPDFAMKMLLESIFNNTGEVVAKRKGRRKREILGTPTEAAILEYGLSLGQDFHKERKACKIVKVEPFNSEKKRMGVVLELPEGNLRAHSKVASEIVLAACDKGINSNGDVVSLDAEKSNYLKDTIYSFAREALRTLCLACMVLENRFSADDSIPTSGYTCIGIVGIKDPVRPGVKESVATCRKAGITVRMVTGDNNNTAKAITIECGILTDNGMDIEGPDFREKTHEEMFELIPKIQVMARSSPFDKHTLVKQLRTTFEEVVAVTGDGENDAPALHEADIGLTMGIAGTEVAKESADVIILDDNFSTIVTVAKWRRSVFNEISSSEMEEIDVFKGILDNHVFVAVISACPLQPLKDDPSLNQSPESH 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0189 390 Gene3D - 15 192 IPR023299 GO:0000166
Lele53g0189 390 Gene3D - 193 333 IPR023214 -
Lele53g0189 390 FunFam Calcium-transporting ATPase 181 333 - -
Lele53g0189 390 Gene3D - 334 346 - -
Lele53g0189 390 PANTHER CATION TRANSPORTING ATPASE 1 346 - -
Lele53g0189 390 FunFam Calcium-transporting ATPase 1 192 - -
Lele53g0189 390 PRINTS H+-transporting ATPase (proton pump) signature 288 304 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele53g0189 390 PRINTS H+-transporting ATPase (proton pump) signature 320 345 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele53g0189 390 PRINTS H+-transporting ATPase (proton pump) signature 144 162 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele53g0189 390 SUPERFAMILY HAD-like 181 334 IPR036412 -
Lele53g0189 390 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 1 197 IPR023299 GO:0000166
Lele53g0189 390 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 258 347 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele53g0189 390 Pfam haloacid dehalogenase-like hydrolase 184 302 - -
Lele53g0189 390 PRINTS P-type cation-transporting ATPase superfamily signature 312 324 - -
Lele53g0189 390 PRINTS P-type cation-transporting ATPase superfamily signature 207 217 - -
Lele53g0189 390 PRINTS P-type cation-transporting ATPase superfamily signature 288 307 - -
Lele53g0189 390 PRINTS P-type cation-transporting ATPase superfamily signature 185 196 - -
Lele53g0189 390 Pfam Cation transport ATPase (P-type) 46 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0189 Lele-ChrLele53 1569968 1572103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0189 341 371 Primary Pumps ATPases AT4G37640 87.097 2.97e-09 57.0