Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0186 ATGAGTTGCAACGGTTGCCGAGTTCTTCGAAAGGGATGCAGTGAGAACTGTATATTGCGACCTTGCTTGCAGTGGATCGATGGCCCTCAAGCCCAAGGTCACGCCACTGTGTTCGTCGCTAAGTTCTTTGGCCGTGCCGGCCTCATGTCTTTTATTTCTAACGTCCCTCCCAACCAGAGACCTGCTCTGTTTCAGTCCTTGTTGTTCGAAGCGTGTGGACGAACCGTGAACCCTGTGAACGGAGCTGTTGGGCTTCTGTGGACCGGAAACTGGCATGTGTGCCAGGCCGCCGTGGAGACGGTGCTGCGCGGTGGCACTTTGAAGCCCATCCCGGAGCTTCTAGGCCTGGATGCTCCGGCTCCGGTTCCGGCTACGGATGAGGCATCCGAAGCGGAGGTTACGTGCAATGACATGCGGAGGATCCAAGATCCGAACTCGAATTTGCGGTATAATGACAAGGTCTCACCCGGCGGCAAAATCAGACTGTCTGATGACTCTACCATGCTCCAGACGGCCGATCTCGACCTCCGATTGACGCCAAGCTTCCTCCATAAAGTGCCTGCCTACTGCTGCGGGCCAGAAGTCCGACAGCCGGGTTCGCCGTCTATGAACTCGGAAGAATCCGTCACGACGGCGACTTGTTTGGAAAGCGGGATCGGAGATCCCCACGCTCACGGCGGAGACCCGAAACTTCTCAACCTTTTCATTTGA 711 0.564 MSCNGCRVLRKGCSENCILRPCLQWIDGPQAQGHATVFVAKFFGRAGLMSFISNVPPNQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVETVLRGGTLKPIPELLGLDAPAPVPATDEASEAEVTCNDMRRIQDPNSNLRYNDKVSPGGKIRLSDDSTMLQTADLDLRLTPSFLHKVPAYCCGPEVRQPGSPSMNSEESVTTATCLESGIGDPHAHGGDPKLLNLFI 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0186 236 Pfam Lateral organ boundaries (LOB) domain 2 101 IPR004883 -
Lele53g0186 236 ProSiteProfiles LOB domain profile. 1 107 IPR004883 -
Lele53g0186 236 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 1 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0186 Lele-ChrLele53 1555486 1556330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0186 1 235 AS2 family AT3G49940 56.863 8.27e-86 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lele53g0186 LOB 1.4e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0186 53 1555486 1556330 Lele49g0341 49 2000892 2001623 CCT
Lele53g0186 53 1555486 1556330 Lele50g0360 50 2060344 2061083 CCT
Lele53g0186 53 1555486 1556330 Lele51g0355 51 2019401 2020133 CCT
Lele53g0186 53 1555486 1556330 Lele52g0366 52 2142099 2142841 CCT
Lele53g0186 53 1555486 1556330 Lele55g1299 55 19448258 19449104 hybridization
Lele53g0186 53 1555486 1556330 Lele56g1247 56 15810293 15810995 hybridization