Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0181 ATGTCGAAGGCGCGTGTTTACGCGGACGTCAATGTTCATCGCCCTAAAGAATACTGGGATTACGAGTCGCTCACCGTTCAGTGGGGAGATCAAGATGATTATGAGGTTGTGCGAAAAGTAGGAAGGGGAAAATATAGTGAAGTTTTCGAGGGTGTAAATGTTAATAGCCACGAGCGCTGCGTAATCAAGATTCTCAAGCCTGTCAAGAAAAAGAAGATCAAAAGAGAGATAAAAATACTTCAGAACCTTTGTGGAGGCCCGAATGTTGTCAAGCTTCTTGATATCGTCAGAGATCAACACTCAAAAACTCCAAGCTTGATATTTGAGTATGTCAACAGTACAGATTTCAAAGTTTTGTATCCAACCTTCACTGATTATGACATACGTTATTACATATATGAGCTACTCAAGGCATTGGATTACTGCCATTCTCAAGGCATAATGCATAGAGATGTGAAGCCTCATAATGTTATGATAGATCATGAGTTGCGAAAACTTCGCTTGATAGATTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAATATAATGTTCGTGTAGCATCAAGATACTTTAAGGGGCCTGAGCTACTAGTTGATTTGCAAGACTACGACTACTCATTAGATATGTGGAGCCTTGGCTGTATGTTTGCTGGAATGATATTTCGCAAGGAGCCATTCTTTTATGGTCACGACAACCATGATCAGCTTGTCAAAATCGCTAAGGTGATTGGGACCGATGAATTAAGTGCATATCTGAATAAGTATCATCTGGAGCTTGATCCTCAACTTGATGCGCTTGTGGGAAGACATAGTCGCAAGCCTTGGTCTAAATTTATTAATGCTGATAATCAGCATCTTGTGTCTCCAGAGGCAATTGATTTTCTTGATAAGCTCCTTCGATATGATCATCAGGACAGGCTCACTGCAAAAGAAGCAATGGCTCACGCATATTTCTCTCAGGTAAGGGCAGCAGAAAGCAGCAGAATGAGAACGCAGTAA 1002 0.4112 MSKARVYADVNVHRPKEYWDYESLTVQWGDQDDYEVVRKVGRGKYSEVFEGVNVNSHERCVIKILKPVKKKKIKREIKILQNLCGGPNVVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTFTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVIGTDELSAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAKEAMAHAYFSQVRAAESSRMRTQ 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0181 333 PANTHER CASEIN KINASE II SUBUNIT ALPHA 1 329 IPR045216 GO:0004674|GO:0006468
Lele53g0181 333 Pfam Protein kinase domain 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele53g0181 333 ProSitePatterns Protein kinases ATP-binding region signature. 40 63 IPR017441 GO:0005524
Lele53g0181 333 Gene3D Transferase(Phosphotransferase) domain 1 111 319 - -
Lele53g0181 333 CDD STKc_CK2_alpha 15 319 IPR045216 GO:0004674|GO:0006468
Lele53g0181 333 Gene3D Phosphorylase Kinase; domain 1 34 110 - -
Lele53g0181 333 SMART serkin_6 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele53g0181 333 SUPERFAMILY Protein kinase-like (PK-like) 9 323 IPR011009 -
Lele53g0181 333 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Lele53g0181 333 FunFam Casein kinase II subunit alpha 20 110 - -
Lele53g0181 333 ProSiteProfiles Protein kinase domain profile. 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele53g0181 333 FunFam Casein kinase II subunit alpha 111 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0181 Lele-ChrLele53 1507466 1514443 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0181 32 319 Core Cell Cycle Gene Families AT1G76540 30.645 7.21e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Lele53g0181 Pkinase 4.9e-65 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0358 50 2049178 2054970 Lele53g0181 53 1507466 1514443 CCT
Lele51g0352 51 2009824 2012909 Lele53g0181 53 1507466 1514443 CCT
Lele52g0363 52 2126312 2134617 Lele53g0181 53 1507466 1514443 CCT
Lele53g0181 53 1507466 1514443 Lele55g1304 55 19489352 19495129 hybridization
Lele53g0181 53 1507466 1514443 Lele56g1253 56 15852715 15857683 hybridization