Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0171 ATGATTATGGGAGACAATGTTGTGCCACCCATTGCCTTGCTGGATTCGTCCATGGATTTTGATTACATGGATGAACTTTTCTCAGATGGTTGCTGGTTGGAAACCGCTACAGATGGATCTAATTTTTTGCTGGGATGCCCTTCTGCGTCCAATCCCCTCCTTGATTCATCATTTTCATGGCCTGCCTTGGACACTAATGGGCATGTGAATCTAGAACAAAGGCAGAGTCAATTGATTGATGACTACCAGGAAACACAAACTAACACTCGATCGGATGGCAAGGGCAAGGACATAATAGATGTTGCTGGGACTTGTAATGCTTCTGAAATTCGTTCAGTTGAGAGTTCAGAAGTCGTTAGGAGGTGGGGGATTGGACCTATGGCTAATCCGAGCCCTGGATGTTCTGTGTTGGAGAGACTAATTAAGGCACTTGTGTATATCAGAGATTTCAATAGAGACAAAGATATGCTTTTACAAATATGGGTGCCGGTTAATAGAGAGGGTGGAAGGATTTTAACCACTTATGATCTTCCCTTCTCGCTTGAAAGCAGCAGTCCAAATCTTGCCAAGTATCGAGAAATCTCTGCCAAATATCATTTTTCAACTGAGGGGCATTCTAGGGGGAATGATGAGTACCCTCGAGTTGACTATGCTCACGAGTATGATGTGCGTGGATCTTTAGCACTTCCAATCTTTGAGAAATGTAGCAACATTTGCTTGGGTGTTATTGAGGTTGTCATGACAGCCCAGAAGATCAAGTATTTCCCTGAGCTTGAGAGTGTTTGCAAAGCACTTCAGGCTGTTGATCTCAGAAGCAAAAATATTTCGAGTACACAGAATGTGAAGGCACGCGACAATTCCTATGAAGCTGCACTGCCTGAGATCCAAGAGGTGTTGAGATCAGCATGTGAAATGCACAAATTACCTTTAGCTCAAACTTGGGTTCCGTGTATCAAGCAAGGCAAAGAGGGGTGCCGGCACACAGATGATAATTATCTACACTGTGTATCTCCTGTTGAGCATGCTTGTTACGTTGGTGATCCTTGTGTCCAGGCTTTTCATGAGGCTTGCTCTGAGCATCACTTGTTAAAAGGTCAAGGTGTCACTGGTGAAGCTTTTATGACCAATCAACCATGCTTCTCGACTGATGTAACTTCCTTTAGCAAGATAGATTATCCACTGTCTCATCATGCAAGAATTTTTGGGTTGCGAGCTGCTGTTGCTATACGCCTGCGAAGCATCCATAACAGCACAGATGACTTTGTACTCGAGTTCTTCTTGCCTGTAAATTGCACTGACAGTGAAGAACAGAAGAAGATGCTCACTTCATTGTCTATGATTATACAAAGGGTTTGCCATAGCCTGCGGGTGATAACAAATAAAGAATTGGAGGAGGAAACCAGCCTATCAATTGATGAAGTGACAGTCCCTGCAGAGAGTAGATCTGCTAGAATGGAGTTCCAACAATGCAGGAATGTTGCTTCGCATGGCACCAAAGAAAAGTCAAATGAAACTTTGACTAGGCAGATGTCTAACCTGAGTCAGCAAGAAGACTCTATTTTAAAAGGAAACCTCGACTATGGTTTGGAGTGTTCTTCTTTTGGTGACGGTGGCTCACCAATTGCAGGTTTAAGTAAAACGGTGGACAAAAGACGGACCAAAGCAGAGAAAACTATTACCCTGCAGGTTCTTCGGCAATATTTTGCAGGAAGCCTCAAAGATGCGGCGAAGAATATTGGTGTTTGTACTACAACTTTGAAAAGAATCTGTCGCCAACATGGGATAAAGCGTTGGCCTTCTCGAAAGATTAAAAAGGTCGGTCACTCCTTACAGAAACTTCAACTTGTCATTGACTCAGTTCATGGTGCCTCTAGTGCTTTTCAGATAGATTCTTTCTACTCAAAGTTTTCGGAGCTAGCATCTCCAAATTTGCCAGGAAGCAGCTTGTTCTCAACTTCAAAGCAAAGTGATCTTCCAAATCCATCCAGCACAAGGCCTGATACTAGCTTGCTGAGCCCAGAAGCGCCCTCATCTTCATGCAATCAAAGTTCCAGTTCAAGCCATTCCTCTTCTAACATGTCAGAGTTACAGCTTCATGCACAAAATGTTGCCGGTGGAAAAGTTCCTAGGTGTAGAGAGGATTCTGCTAATGAGGTTTTGAAGAGGATTCCAAGTGAAGTAGGGCTAAAAAGCTCAAGTCAAGATACAGCAGAGCTCTTGCCAACATCCCAAAGCCAGGAAACACCTTGTGAACATCCAAAAACTGAGTTCAAAAGAAATCATAAAGCACATAAAAAAGAAGATACTCACAGAGTAAAAGTCACTTTCAGAGAGGAGAAAACCCGGTTTCGGATGCCAAAGAGTTGGCGTTATGAAGATCTTTTGTGGGAAATTACTTGGCGATTCAACATAGATGACATGTGCAAATACGATATCAAGTATTTGGACGATGACTCTGACTGGGTTTTGCTCACTTGCGATGCTGATTTGGAGGAGTGCATTGATGTTTGTCAACATTCTCAGAGCAGTACCATCAAACTTTGCCTTCTTGATAGTAAATCATAG 2565 0.4296 MIMGDNVVPPIALLDSSMDFDYMDELFSDGCWLETATDGSNFLLGCPSASNPLLDSSFSWPALDTNGHVNLEQRQSQLIDDYQETQTNTRSDGKGKDIIDVAGTCNASEIRSVESSEVVRRWGIGPMANPSPGCSVLERLIKALVYIRDFNRDKDMLLQIWVPVNREGGRILTTYDLPFSLESSSPNLAKYREISAKYHFSTEGHSRGNDEYPRVDYAHEYDVRGSLALPIFEKCSNICLGVIEVVMTAQKIKYFPELESVCKALQAVDLRSKNISSTQNVKARDNSYEAALPEIQEVLRSACEMHKLPLAQTWVPCIKQGKEGCRHTDDNYLHCVSPVEHACYVGDPCVQAFHEACSEHHLLKGQGVTGEAFMTNQPCFSTDVTSFSKIDYPLSHHARIFGLRAAVAIRLRSIHNSTDDFVLEFFLPVNCTDSEEQKKMLTSLSMIIQRVCHSLRVITNKELEEETSLSIDEVTVPAESRSARMEFQQCRNVASHGTKEKSNETLTRQMSNLSQQEDSILKGNLDYGLECSSFGDGGSPIAGLSKTVDKRRTKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVHGASSAFQIDSFYSKFSELASPNLPGSSLFSTSKQSDLPNPSSTRPDTSLLSPEAPSSSCNQSSSSSHSSSNMSELQLHAQNVAGGKVPRCREDSANEVLKRIPSEVGLKSSSQDTAELLPTSQSQETPCEHPKTEFKRNHKAHKKEDTHRVKVTFREEKTRFRMPKSWRYEDLLWEITWRFNIDDMCKYDIKYLDDDSDWVLLTCDADLEECIDVCQHSQSSTIKLCLLDSKS 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0171 854 ProSiteProfiles RWP-RK domain profile. 545 626 IPR003035 -
Lele53g0171 854 CDD PB1_NLP 770 849 IPR034891 -
Lele53g0171 854 MobiDBLite consensus disorder prediction 648 694 - -
Lele53g0171 854 Pfam RWP-RK domain 558 606 IPR003035 -
Lele53g0171 854 SMART PB1_new 769 852 IPR000270 GO:0005515
Lele53g0171 854 SUPERFAMILY CAD & PB1 domains 764 852 - -
Lele53g0171 854 MobiDBLite consensus disorder prediction 722 764 - -
Lele53g0171 854 PANTHER PROTEIN NLP8 93 849 IPR045012 GO:0003700
Lele53g0171 854 MobiDBLite consensus disorder prediction 727 750 - -
Lele53g0171 854 Gene3D - 770 852 - -
Lele53g0171 854 ProSiteProfiles PB1 domain profile. 769 852 IPR000270 GO:0005515
Lele53g0171 854 Pfam PB1 domain 769 849 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0171 Lele-ChrLele53 1428664 1432121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0171 3 846 NLP Transcription Factor Family AT1G76350 45.679 0.0 688
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lele53g0171 PB1 1.2e-19 CL0072