LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele53g0157	ATGAACATGGTCATTGATAGCAGGAAGGACATGGATCGGATCAAGGGCCCATGGAGCCCCGAAGAGGACGACGCCTTGCAGAAGCTGGTAGAAAAGCACGGGCCTAGGAATTGGTCCCTGATCAGCAAGTCCATTCCGGGTCGGTCCGGCAAGTCTTGTCGGCTCCGATGGTGTAATCAGCTTTCTCCTCAGGTGGAGCACCGACCATTCTCTCCCGAAGAGGATGAGACTATTATTCGGGGTCATGCCCGATTCGGCAACAAATGGGCAACCATAGCCCGGCTTCTATCGGGTCGAACCGATAACGCCATCAAGAACCACTGGAACTCCACCTTGAAGCGCAAGTGTGCGTCCATGATGGTGGATGAAACCGCCACTTGCGTCGTTGGATTCGACGGAAGTTTCAGCCCCCAGCCACTTAAGAGATCGGTGAGTGCCGGAGCTGCTATGCCGGTGTCGACTGGGTGTTACGTAAACCAGCAGGCGCCGAGTAGCCCGTCCGGATCCGACGTTAGCGATTCCAGTGTGCCGGTAGCTTCTTCTTCCCATGTTTACCGGCCTGTGGCCAGAACCGGAGGAGTTCTACCACCCGTAGAAACGACGTCGTCTTCGAATGAACCTACAACTTCGTTATCCCTATCACCTCCCGGAGTGGACTCCTCAGAAGTCTCGAATCGTCCTTCAGAGTCCACACACGCTGCTCAGTTAGCGAATACTGTGCGTTTGCTACCGGCAATGGTTTCAGCTGTGGCGTCCTCGGCAGCTCCGCCGCTGCCCCCAGTAGGCGCGGCGATGCCGGTGCAGCATCAGGTTCATTTAGGCCTAGGCGATCGGAGGAGCGGGGAAGGCGTGTCATCGGCGGCAAACCCTAATGGTGCTGCACCATTCAATTTCAGTGCAGAGTTGCTCGCTGTGATGCAAGAGATGATAAGAACGGAGGTGAGGAGTTATATGGCGGGACTAGAGAAGAGGCAGCTCATGGATTTGCGAACGTTTCAGTAA	1002	0.5569	MNMVIDSRKDMDRIKGPWSPEEDDALQKLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSPEEDETIIRGHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASMMVDETATCVVGFDGSFSPQPLKRSVSAGAAMPVSTGCYVNQQAPSSPSGSDVSDSSVPVASSSHVYRPVARTGGVLPPVETTSSSNEPTTSLSLSPPGVDSSEVSNRPSESTHAAQLANTVRLLPAMVSAVASSAAPPLPPVGAAMPVQHQVHLGLGDRRSGEGVSSAANPNGAAPFNFSAELLAVMQEMIRTEVRSYMAGLEKRQLMDLRTFQ	333

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele53g0157	333	MobiDBLite	consensus disorder prediction	159	233	-	-
	Lele53g0157	333	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Lele53g0157	333	SUPERFAMILY	Homeodomain-like	12	108	IPR009057	-
	Lele53g0157	333	MobiDBLite	consensus disorder prediction	1	20	-	-
	Lele53g0157	333	Pfam	Myb-like DNA-binding domain	18	76	-	-
	Lele53g0157	333	SMART	sant	66	114	IPR001005	-
	Lele53g0157	333	SMART	sant	14	63	IPR001005	-
	Lele53g0157	333	PANTHER	MYB PROTEIN-RELATED	15	204	-	-
	Lele53g0157	333	Gene3D	-	68	126	-	-
	Lele53g0157	333	CDD	SANT	17	59	IPR001005	-
	Lele53g0157	333	ProSiteProfiles	Myb-like domain profile.	10	61	IPR001005	-
	Lele53g0157	333	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	10	65	IPR017930	-
	Lele53g0157	333	Gene3D	-	14	66	-	-
	Lele53g0157	333	FunFam	Transcription factor MYB44	69	115	-	-
	Lele53g0157	333	MobiDBLite	consensus disorder prediction	159	181	-	-
	Lele53g0157	333	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	67	116	IPR017930	-
	Lele53g0157	333	MobiDBLite	consensus disorder prediction	196	233	-	-
	Lele53g0157	333	CDD	SANT	69	112	IPR001005	-
	Lele53g0157	333	FunFam	MYB transcription factor	15	66	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele53g0157	Lele-ChrLele53	1274974	1275975	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele53g0157	7	323	MYB Transcription Factor Family	AT4G37260	50.309	4.40e-98	291

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele53g0157		Myb_DNA-bind_6	1.9e-18	CL0123