Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0153 ATGTGTTTGTGTTCAATTGATGCCAATTCATTTCAGTTGGCTGAATTTCGTTCCCCCACCCCCCAACAAACAAAACACCCCTTTGGTGAATTGCTAATAGCAATTGCTCTTTTTACTGAAGTAAGGCGAACATATACTTCCATGAAGAAGTTTGTGTATACGCAACCAGATCAAAGTAAACTTTATCCCCTGAAAGAACATGGAAATACCAAGATCAAGGATAATCATAAGTATTTTGTATTAATAAGTATTAAGATTTTCAGTTTAAGGTATCTATCTATCTATCTATCTATCTGGCCTCGGCCTTGGAACTTTGAAGAACTTACAATGGAGGAGAAGTTAGACATTGCAGACAAAAAGGTTCTGGTTGATATAGTAAAATTGGTACAAAAAAAAGGAATGCAGGGTGCGCTGGGAGACTGGAAAACCTTCTTAATCAGTCATGATAAAAAGTTCGGGGCTAATTTGAGTGATCCAGCAAAGAGGTCCCATGAGACATTGGTTGCATTTCTAAAGACGTTTTCAAAGCAGGATGATTTAAAGTTTATTGATACCATCTTGCGACGCCATTCTAATCAAGACTTATTTGAGCTATTCAATGATAAGTCTCATGACATCCCCGAGCAGAGGCTTGTCCAGAACACTTTGCAGCACCCGTGGTATCCATTGGATTATACATTTGGAGTACTTGATGAGGACTGGGTGGTTATAAACCTTAAGAAAAAAAACAGGTTGCTGAAATTTACCAAGATGGTTGCTATTGATTGTGAAATGGTTCTCTGTGAGGATGGGACTGAAGCAGTAGTGAGTGTCTGTGTGGTTGACCGTGATTTGAAGGTTAAACTAAAAAAACTTGTAAGCCCAAACAAAGCAATTGCTGACTACAGATCAGAGATTACTGGTGTATATCCTCAGGATCTCGAAGGTGTTACTTGCTCATTGGCTAATATACAGAAATCCTTGCATAAGATGTTAATGGATGGAACAATATTAGTGGGACATAGTTTGCATAATGATCTACGTGCGCTGAAGCTAGATTATGTTAGAGTGATTGACACTTCATATATCTTCCAATACTCAGATGGTAATACTCACAGGAGACCTTCTTTGAATGCTTTATGCAAGGCCGTGTTAGGTTATGAACTTCGGAAAACAGGTGCTCCACATAATTGTCTTGATGATGCGATGGCGGCAATGAAACTTGTTCTTGCTAAGATAGAGCGTGGTGTTGATATTGCAATTCCCTTGGCTCAAGAGCCTGTTCTTGAAAGCGAAATGGCTAAGCTTCTTGTTCACAGGATATCAGCTGGGGTTAATAGTGAAGAACTGTATAGAGTTGTTCCTGGGGATTTCAATTTAGAACTGAGGCCGCCTAAAGGGGAAAAATATTCTGCCTTTGCCATCTTCAAGAATCCACAAGAGGCCCATGAGGCCTTTGAAAGTCTCAAAGGCGACATCGAAAAGGATTCAGCTGGACACCGGCAGAAGCTTGTCAAATTCCGGCTCAGTACAGGTGAGAAGACTGTTATATGTATTCGGAAAATGTCACGTGATAGCCCCAATTACTCCAAGAGAGCATTAGAAGCGGACGAAACAACAGTGTCGAAGAAAGCAAAGATGGATCATGAAACTGAAGGGAATGCCACGACCATCTCTACCGAGTGTGACACCCACTTGAATGAGATTGAAGCATTAAATCAACGGCTGAAAGAAAATGAATCGGGAATTGAATCGCTGAAGCAACAGTTGAAACAAAAGGATTACGAAATCTCCATATTGAATAAAATGGTTTCCTCCTTGAACAAGAAATTAAGGAAATGA 1821 0.3998 MCLCSIDANSFQLAEFRSPTPQQTKHPFGELLIAIALFTEVRRTYTSMKKFVYTQPDQSKLYPLKEHGNTKIKDNHKYFVLISIKIFSLRYLSIYLSIWPRPWNFEELTMEEKLDIADKKVLVDIVKLVQKKGMQGALGDWKTFLISHDKKFGANLSDPAKRSHETLVAFLKTFSKQDDLKFIDTILRRHSNQDLFELFNDKSHDIPEQRLVQNTLQHPWYPLDYTFGVLDEDWVVINLKKKNRLLKFTKMVAIDCEMVLCEDGTEAVVSVCVVDRDLKVKLKKLVSPNKAIADYRSEITGVYPQDLEGVTCSLANIQKSLHKMLMDGTILVGHSLHNDLRALKLDYVRVIDTSYIFQYSDGNTHRRPSLNALCKAVLGYELRKTGAPHNCLDDAMAAMKLVLAKIERGVDIAIPLAQEPVLESEMAKLLVHRISAGVNSEELYRVVPGDFNLELRPPKGEKYSAFAIFKNPQEAHEAFESLKGDIEKDSAGHRQKLVKFRLSTGEKTVICIRKMSRDSPNYSKRALEADETTVSKKAKMDHETEGNATTISTECDTHLNEIEALNQRLKENESGIESLKQQLKQKDYEISILNKMVSSLNKKLRK 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0153 606 Gene3D - 247 412 IPR036397 GO:0003676
Lele53g0153 606 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 120 413 - -
Lele53g0153 606 Coils Coil 562 596 - -
Lele53g0153 606 CDD REX1_like 252 403 IPR034922 -
Lele53g0153 606 SMART exoiiiendus 250 411 IPR013520 -
Lele53g0153 606 FunFam Small RNA degrading nuclease 3 246 420 - -
Lele53g0153 606 SUPERFAMILY Ribonuclease H-like 251 406 IPR012337 -
Lele53g0153 606 Pfam Exonuclease 252 401 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0153 Lele-ChrLele53 1221440 1228728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0153 250 401 C2H2 Transcription Factor Family AT2G48100 32.948 1.33e-12 67.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0153 53 1221440 1228728 Lele55g1331 55 19791479 19799675 hybridization