Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0143 ATGGAAGCTGAACAATCGGATATAGGCTCCAAGAAGAGAGGGGTCGAAGGAGAGAGAAGGTACAAAGGGATTAGGATGAGGAAGTGGGGCAAGTGGGTCGCCGAAATCAGAGAACCCAATAAGCGTTCCAGGATTTGGCTCGGATCCTATTCTACCCCCGTCGCCGCCGCCAGAGCCTACGACACTGCCGTTTTCTATCTCAGAGGACCCTCCGCTCGCCTTAATTTGCCCGAGCTTCTCGACGGAGAAAACTGCGTGGTCGCATCCGCCGGCGACTTGTCGGCTTCCTCGATTCGCAAGAAAGCCATCGAAGTCGGCGCTAGAGTGGATGCCCTTCTGGCGGCTCACCACCACCGCCACCATGCGTCAGCAGAGGCATCGAATCTCATACCTCGCGGTGTGGAGCGGGTTGACCTGAACAAGATGCCGGAACCGGAGAATCCGGAGTGTAACTGA 456 0.568 MEAEQSDIGSKKRGVEGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNLPELLDGENCVVASAGDLSASSIRKKAIEVGARVDALLAAHHHRHHASAEASNLIPRGVERVDLNKMPEPENPECN 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0143 151 Gene3D AP2/ERF domain 19 78 IPR036955 GO:0003700|GO:0006355
Lele53g0143 151 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Lele53g0143 151 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Lele53g0143 151 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Lele53g0143 151 SUPERFAMILY DNA-binding domain 20 77 IPR016177 GO:0003677
Lele53g0143 151 FunFam Ethylene-responsive transcription factor 2 19 78 - -
Lele53g0143 151 CDD AP2 20 79 IPR001471 GO:0003700|GO:0006355
Lele53g0143 151 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 10 148 - -
Lele53g0143 151 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Lele53g0143 151 Pfam AP2 domain 20 69 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0143 Lele-ChrLele53 1168762 1169217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0143 3 147 AP2-EREBP Transcription Factor Family AT3G50260 59.459 1.16e-53 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele53g0143 AP2 9e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0309 50 1812410 1818960 Lele53g0143 53 1168762 1169217 CCT
Lele51g0304 51 1738087 1746136 Lele53g0143 53 1168762 1169217 CCT
Lele52g0319 52 1886069 1890511 Lele53g0143 53 1168762 1169217 CCT
Lele49g0294 49 1744225 1744788 Lele53g0143 53 1168762 1169217 CCT
Lele53g0143 53 1168762 1169217 Lele55g1345 55 19862591 19863046 hybridization
Lele53g0143 53 1168762 1169217 Lele56g1292 56 16170211 16170672 hybridization