Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0136 ATGACAGGACGAATGAGTCTCTCGGATTGTAATGCTAACAACCAAAACAAGGTCAATCATCAATCCACTGGAGCATTGGAATTGCTACCTACTGCAAGTTCCCTCACTGCAGGTGATCAAAGGTTCCCTGATCAGGTTTCAGGGTCAAATCATGTCGGTTATAAAGAGAGTATAAATATTGTTCCGAATAATGATTACGGTGCTGCTGTTTGTCCTCGTGAATCATCTGACGCATTGAGGTTTTCTTCTTTAACTTCCCTTACGGGAAATTTTATAAGGTTCCCAGATGGGCTTTCTGGATCAAGTGATCTCCATTGTCAAGAAAGTAATAGTAATAACATTATTCCAAGTATTGGTCGCAGTGCTGGTGTTGGTCCTCACAATGTTGACTCAGGTGAGAGTTCTAGCACAGCTGCACAAACTGGAATTTCCAGACGGCGGGCTTCTGAAGTCTATGGCAGCAATGGTCTAAACATATCTACTCCATGCACTAGCCCTGTTAGTCATGAAGAACAGTCTGATACCATTATTGGTCATGATACTAAAAGGCCAGTTTCTGATATGCAGCATTTGAATGCAGCAAGACTATCTGAAAACTTCCCAAGTAACATTCATCATCATGCAGCTGCGAATCAACAAGCTTTTCTACCATTCAGCATTTTGGCATCAAGTAGCACGATGAATGCTCATATCCAGTTACCCAGTCAGTCGCCTTTTTATGGCCAAGACAACCATCCTCCTTTCTTCAGGTCTGCAGAAAGTTCCATTAGTCCAATTCCCTCAATGCAGCCAGATGAGCATGCTCCTAATTTTCATGAAACTTCACAGGCTGCCCCTGGGATTCACATGATGAGATCAAGTACTGGGTTTTCTTCATTTTTGTCTGTCTATACTGCAGCGGAAAGTGAGGCAGTGGCACCCCTTCGTTACCCAAGAAACATAATTGAAAGCATCGTGACCGGCCTCCAAATTGGGAGAAGAAATTGGGTACATGATGCAAGAAACTCGCATTTCGTTACTGCAAACTTCCATGGAGATGTCTGTCCCCTTCATGGTTTTTCTTCTGATATAATTCATTCAGCAAATGCCCCTACTTGGTTCCCAGGGTTCAATTTTGCTGCTCGTTATGCGCCAACTCCATCAAGAATTCTGAACCATCCTGTGCTTGCAACTACTGATTTCCCTAGGCATAGTCATAGCCCAGCAGATTCAGACCCTTCAGCAGTCATACAGGAAATGAGCTTTGCTGTTGGATTTGGTAATTCTGTATCTCAGAATCAGCATACATCAGGAGCAAGATCTGAGTATCAATTTACATGGTCACTTGCTAATGCTCGAAATAGAATGTGGCTGAGGCCTGAGAATCTGCACACATCAGAAGCAAGACTCGAGAATGAAGATGATAGCCATCATGATCACCTTTACCATCATTTTTGGTCACCTGCTAATGCTGAATATAGAAGGAGGCTGAGTCTTGAGCTTCACCATCTCCTGGACCAACTGCACAGGACGATTCCACGGGAATTGAGGATGTTGGACCATTCAGTTATGATGGATATGCTTCGGGCGCATGGCATTGTAGATGAAGCGCATTTTGATTTAGAGAACTGGACATCTGAGCTTCAGGATGTTGCTGACCAAGCGGAGCCTAATAACGTATCAGAGATGGGGCTGAGTGAGGAAATGATTCTCGGCCATCTCTGGAAGGAAAATTTCCAGCCCAACGCAGATGAGTCTGAGGAAAATGAATGCTGCTGCATATGTCAGGAGGATTACCAAAAGAATGAAGGTCTGGGTAAGCTGTGGTGTGGCCACAGATTTCATGTAGAGTGTATCAAGGCATGGCTGGAGCTGAAGAACATCTGCCCCATTTGCAAACAAATTGCACTCCCTATTTATCTTTGA 1905 0.4394 MTGRMSLSDCNANNQNKVNHQSTGALELLPTASSLTAGDQRFPDQVSGSNHVGYKESINIVPNNDYGAAVCPRESSDALRFSSLTSLTGNFIRFPDGLSGSSDLHCQESNSNNIIPSIGRSAGVGPHNVDSGESSSTAAQTGISRRRASEVYGSNGLNISTPCTSPVSHEEQSDTIIGHDTKRPVSDMQHLNAARLSENFPSNIHHHAAANQQAFLPFSILASSSTMNAHIQLPSQSPFYGQDNHPPFFRSAESSISPIPSMQPDEHAPNFHETSQAAPGIHMMRSSTGFSSFLSVYTAAESEAVAPLRYPRNIIESIVTGLQIGRRNWVHDARNSHFVTANFHGDVCPLHGFSSDIIHSANAPTWFPGFNFAARYAPTPSRILNHPVLATTDFPRHSHSPADSDPSAVIQEMSFAVGFGNSVSQNQHTSGARSEYQFTWSLANARNRMWLRPENLHTSEARLENEDDSHHDHLYHHFWSPANAEYRRRLSLELHHLLDQLHRTIPRELRMLDHSVMMDMLRAHGIVDEAHFDLENWTSELQDVADQAEPNNVSEMGLSEEMILGHLWKENFQPNADESEENECCCICQEDYQKNEGLGKLWCGHRFHVECIKAWLELKNICPICKQIALPIYL 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0136 634 SUPERFAMILY RING/U-box 579 630 - -
Lele53g0136 634 MobiDBLite consensus disorder prediction 103 118 - -
Lele53g0136 634 MobiDBLite consensus disorder prediction 128 147 - -
Lele53g0136 634 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 545 630 IPR013083 -
Lele53g0136 634 SMART ring_2 585 625 IPR001841 -
Lele53g0136 634 Pfam Ring finger domain 585 626 IPR001841 -
Lele53g0136 634 ProSiteProfiles Zinc finger RING-type profile. 585 626 IPR001841 -
Lele53g0136 634 MobiDBLite consensus disorder prediction 103 147 - -
Lele53g0136 634 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 125 630 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0136 Lele-ChrLele53 1066386 1069211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0136 482 630 C3H Transcription Factor Family AT2G15530 37.107 2.36e-20 93.6