Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0132 ATGTATATACAGAGCGCTCCATGTTCTTCACAACTGCTTGTTGTAGCGCACTGTTACGTGTTCTTCAATTGTCATCTTCTTCTTGCTTCTTCCCTGAAGCTAATTAACATGTCTTGGGTTCGAGGGAACTTCCTTGGAAGAGGAAGCTTCTCCACCGTCCATCTAGTTGTACCCACCAACGTTAATGCCTCTGAGGTTATTTCTGTTCCTACCGCCGTCAAATCGTCGGAGGCTTTCCTCTGTTCTTTTCTCAAGAACGAGAAGGAGGTTTTGGATTGTCTTGGATTCTGTCCGCAAATTATACAGTGTTCTGGGGATGGGTATAGCTTCGAGAATGGTGGGGAGTATTATAATTTGTTTTTGGAATATGCCGCCGGTGGTAGCCTTGCGGACCACATCAAGAGTCAGGGTGGTCGGTTGCCGGAGTCTGATGTCCGGAGGTACACGATGTCGATTGTGAAAGGAATTCAGCATATACACGCCAAAGGTTTCGTTCACTGTGATATCAAGCTTCAGAACATTCTTCTGTTCGACAATGGAGATATCAAAATTACAGACTTCGGCCTCGCGAAGAGAACAGGGGAGAACGAAGAACAGAGCAGGGGAGAGAAGCAGTGTGAATGGAGGGGAACTCCTCTGTTTATGTCCCCGGAATCGGTGAAGGACAACGTGTATGACTCTCCGGCGGATATATGGTCTCTCGGCTGTGCCGTGGTGGAGATGGTGACCGGAAAGCCCGCATGGAAGAGCCCGAAAGGATCGGAATTGAATAATATCTGTTCGCTGTTGCTTCGAATTGGGGTTGGAGAAGAACTGCCGGAAATTCCCGACGAATTATCTGAAGACGGTAAGGATTTTCTAAGGAAGTGTTTGGTGAAGGATCCTGCGAAGAGATGGACGGCGGAGATGCTTATGAAGCATCCCTTCATAAACCAGGACGATGAAGAATCGTCGCCGAGAAGTCACTTCGATTTTCCAGATTGGGTTTCGAGCACAAGTAGTGTGGCCCCGAATTCGCCGGAATCGGACGAATGGCGTGAATGGAAATTCGATACGTCGTCGAGTGTTACTAGTTTCTGTTCGCCGGTTGATCGAATCCGGCAAATGATGACGGATGAGAGACCCAATTGGTCGGAATCGGAATCTGAAATTTGGGTAGTTGTTAGGTGA 1170 0.4795 MYIQSAPCSSQLLVVAHCYVFFNCHLLLASSLKLINMSWVRGNFLGRGSFSTVHLVVPTNVNASEVISVPTAVKSSEAFLCSFLKNEKEVLDCLGFCPQIIQCSGDGYSFENGGEYYNLFLEYAAGGSLADHIKSQGGRLPESDVRRYTMSIVKGIQHIHAKGFVHCDIKLQNILLFDNGDIKITDFGLAKRTGENEEQSRGEKQCEWRGTPLFMSPESVKDNVYDSPADIWSLGCAVVEMVTGKPAWKSPKGSELNNICSLLLRIGVGEELPEIPDELSEDGKDFLRKCLVKDPAKRWTAEMLMKHPFINQDDEESSPRSHFDFPDWVSSTSSVAPNSPESDEWREWKFDTSSSVTSFCSPVDRIRQMMTDERPNWSESESEIWVVVR 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0132 389 Pfam Protein kinase domain 42 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele53g0132 389 ProSiteProfiles Protein kinase domain profile. 39 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele53g0132 389 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 34 358 - -
Lele53g0132 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Lele53g0132 389 SMART serkin_6 39 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele53g0132 389 Gene3D Transferase(Phosphotransferase) domain 1 34 370 - -
Lele53g0132 389 CDD STKc_MAPKKK 38 310 - -
Lele53g0132 389 SUPERFAMILY Protein kinase-like (PK-like) 32 355 IPR011009 -
Lele53g0132 389 ProSitePatterns Protein kinases ATP-binding region signature. 45 74 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0132 Lele-ChrLele53 1044426 1045595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0132 37 389 MAP Kinase Kinase Kinase AT4G36950 50.970 1.58e-114 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lele53g0132 Pkinase 1.3e-56 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0279 49 1642312 1643373 Lele53g0132 53 1044426 1045595 CCT
Lele53g0132 53 1044426 1045595 Lele49g0274 49 1601326 1606700 CCT
Lele53g0132 53 1044426 1045595 Lele50g0284 50 1665028 1670752 CCT
Lele53g0132 53 1044426 1045595 Lele51g0287 51 1617682 1622980 CCT
Lele53g0132 53 1044426 1045595 Lele52g0293 52 1736901 1742495 CCT
Lele53g0132 53 1044426 1045595 Lele55g1360 55 19993681 19994742 hybridization
Lele53g0132 53 1044426 1045595 Lele56g1303 56 16282964 16284025 hybridization