Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0128 ATGGAGCAGCGTAAACTTGTGGTTTTGGGTATTCCATGGGAGGTCGATACGGAGGGGTTGAAAGAATATATGAGCAAATTTGGTGAATTGGAAGATTGTATTGTCATGAAGGAGCGGTCAACTGGCCGGTCCCGTGGTTTTGGATATGTTACATTTGCATCAGTTGATGATGCTAAGAAAGCACTGTCAAGCGAACATGTTCTTGGCAATAGGATGCTGGAAGTCAAAGTGGCCACACCAAAGGAGGAGATGAGGGCGCCAGTAAAGAAAGTTACCAGAATTTTTGTGGCCAGGATTCCACCATCTGTAACAGAAGCAACTTTTAGAAGTCATTTTGAGAAATATGGCGAGATAACTGATTTATACATGCCAAAGGACCAGGGCTCAAAATCGCACCGTGGAATTGGTTTTATAACTTTTGCTAATGCAGAATCTGTGGAGAATTTAATGGCAGATACTCATGAATTGGGAGGTTCTACTGTGGTGGTTGATCGGGCAACACCGAAGGAAGATGATTTCAGGCCTATTGGCAGAATGTCACAGGGAGGGCCTATTGGCAGAATGTCACAGGGAGGGCCTATTGGCAGAATTTCGCAGGGAGGGTATGGTGCATACAATGCATATATATCTGCAGCAACTCGATATGCAGCACTTGGTGCTCCTACTTTGTATGACCATCCTGGCCCAGTTTATGGAAGGGGAGAACCAGTTTGTGGAATGGGCAATAAAATTTTTGTTGGTCGTCTCCCCCCTGAAGCAACAGCTGATGATCTTCGTGAGTATTTTGGAAGATTTGGCCGTATATTAGACGTATATGTTCCAAAGGATCCCAAGAGAGCGGGCCATAGAGGTTTTGGTTTTGTAACTTTCGGTGAAGATGGTGTGGTAGAGCGTATTTCTCGAAGGTCTCATGAAATTTGTGGACATCAGGTTGCTATAGATTCAGCCACACCTCTTGATGATGCTGGGTCCAGTTCGAATTTTATGATGAGCAGTGTAGATACTTTTGGGGGATATGGCGGTCCTATGCGCACCTATGGGAGGATGTATGGTAGCCTAGACTTCGATGATTGGGGTTATGGAATTGGCAGTGCGAGACCATCAAGAGCAGATTGGAGGTATAGGCCATACTAG 1134 0.4524 MEQRKLVVLGIPWEVDTEGLKEYMSKFGELEDCIVMKERSTGRSRGFGYVTFASVDDAKKALSSEHVLGNRMLEVKVATPKEEMRAPVKKVTRIFVARIPPSVTEATFRSHFEKYGEITDLYMPKDQGSKSHRGIGFITFANAESVENLMADTHELGGSTVVVDRATPKEDDFRPIGRMSQGGPIGRMSQGGPIGRISQGGYGAYNAYISAATRYAALGAPTLYDHPGPVYGRGEPVCGMGNKIFVGRLPPEATADDLREYFGRFGRILDVYVPKDPKRAGHRGFGFVTFGEDGVVERISRRSHEICGHQVAIDSATPLDDAGSSSNFMMSSVDTFGGYGGPMRTYGRMYGSLDFDDWGYGIGSARPSRADWRYRPY 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0128 377 SUPERFAMILY RNA-binding domain, RBD 242 341 IPR035979 GO:0003676
Lele53g0128 377 SMART rrm1_1 93 164 IPR000504 GO:0003723
Lele53g0128 377 SMART rrm1_1 243 314 IPR000504 GO:0003723
Lele53g0128 377 SMART rrm1_1 5 76 IPR000504 GO:0003723
Lele53g0128 377 Gene3D - 1 85 IPR012677 -
Lele53g0128 377 SUPERFAMILY RNA-binding domain, RBD 3 85 IPR035979 GO:0003676
Lele53g0128 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 94 160 IPR000504 GO:0003723
Lele53g0128 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 6 65 IPR000504 GO:0003723
Lele53g0128 377 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 244 290 IPR000504 GO:0003723
Lele53g0128 377 FunFam heterogeneous nuclear ribonucleoprotein 1 84 176 - -
Lele53g0128 377 Gene3D - 239 321 IPR012677 -
Lele53g0128 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 80 IPR000504 GO:0003723
Lele53g0128 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 242 318 IPR000504 GO:0003723
Lele53g0128 377 FunFam RNA-binding family protein isoform 1 239 322 - -
Lele53g0128 377 FunFam heterogeneous nuclear ribonucleoprotein 1 2 83 - -
Lele53g0128 377 Gene3D - 86 208 IPR012677 -
Lele53g0128 377 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 242 355 - -
Lele53g0128 377 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 92 168 IPR000504 GO:0003723
Lele53g0128 377 SUPERFAMILY RNA-binding domain, RBD 89 193 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0128 Lele-ChrLele53 1019775 1024400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0128 15 184 Eukaryotic Initiation Factors Gene Family AT3G16380 29.630 3.58e-13 68.9