Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0125 ATGACGCAGCGGTCGGCGCCAGCGCCTTTTCTGACAAAGACGTACCTACTGGTGGACGACGAGCGGACCAACGACGTGATATCGTGGAGCGAAAGCGGCGACACGTTCGTGGTTTGGAAGCAGGCGGATTTCGCCAAGGATTTGCTCCCCAAATATTTCAAGCACAACAATTTCTCTAGTTTTGTTCGTCAGCTTAACACTTATGGATTCAGAAAGATAGTCCCCGACAAATGGGAATTCGCGAACGAATACTTCAAGCGAGGACGCAAGGAGCTCCTCTCCGAGATCAAACGCCGGAAGACTCTCACACAAGCCTCCGGGAAGTCCGGCAGCGGGGCATCGAACTCCGGCGCCGGCGACGATGCGGGGTCCACCTCCACTTCGTCGAGTGATTCGAAGAATAACCCGGCGGGGGAGGCAGAATACGCAGAGTTATCGGGCGAGAACGAGAAACTGAGAAAAGATAACGAAATGCTGAGCTCAGAGCTGGCAGAAGCGAAGAAGCAATGTGAGGAGCTGGTGGGTTTTCTGACGGAGTACCTGAAGGTGGGGCCCGATCAGATAAATCGTATAATATTGCGGCAAGGAACAAGCGGGTCCAGCCGCGAAGAAGGAGGAGGACGAGAAGAAGAGGACGAAACGAAGGTGGTAGGTGAAGGCGGAGAAAGTCTGAAACTATTTGGGGTTTGGTTGAGAGGGGAGAAAGAAACGACGGAGGAGGAGAAAATGAGGGCCAGCAACAAGAGAGCGCGCGAAGACCAAATGGCCTTTGGTGGGACCCAGCCATCAAAGGAGCTGAAGAAGACTCTGCATTTTGGAACTTCTGCTGTGAAGGTCATGATCAATTGA 849 0.5312 MTQRSAPAPFLTKTYLLVDDERTNDVISWSESGDTFVVWKQADFAKDLLPKYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEYFKRGRKELLSEIKRRKTLTQASGKSGSGASNSGAGDDAGSTSTSSSDSKNNPAGEAEYAELSGENEKLRKDNEMLSSELAEAKKQCEELVGFLTEYLKVGPDQINRIILRQGTSGSSREEGGGREEEDETKVVGEGGESLKLFGVWLRGEKETTEEEKMRASNKRAREDQMAFGGTQPSKELKKTLHFGTSAVKVMIN 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0125 282 Coils Coil 142 169 - -
Lele53g0125 282 MobiDBLite consensus disorder prediction 203 218 - -
Lele53g0125 282 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele53g0125 282 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele53g0125 282 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele53g0125 282 Gene3D - 138 178 - -
Lele53g0125 282 MobiDBLite consensus disorder prediction 237 251 - -
Lele53g0125 282 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele53g0125 282 MobiDBLite consensus disorder prediction 103 150 - -
Lele53g0125 282 FunFam Heat stress transcription factor B-4 2 100 - -
Lele53g0125 282 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele53g0125 282 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 215 IPR027725 -
Lele53g0125 282 MobiDBLite consensus disorder prediction 237 266 - -
Lele53g0125 282 MobiDBLite consensus disorder prediction 103 136 - -
Lele53g0125 282 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele53g0125 282 MobiDBLite consensus disorder prediction 194 218 - -
Lele53g0125 282 Gene3D - 2 101 IPR036388 -
Lele53g0125 282 SUPERFAMILY "Winged helix" DNA-binding domain 6 99 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0125 Lele-ChrLele53 993837 995856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0125 3 236 HSF AT4G36990 59.336 7.01e-84 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele53g0125 HSF_DNA-bind 1.4e-32 CL0123