Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0084 ATGGGGGTACTTTCCATCCTTTCACACCCTTCAACTCTAAGAGCACTTACAGGTAAGTCGAGGAGAGAAGGAGAAGAAGAAGACGACGATGATGAACAAGGAGAAGATTTTAACATGGGAATAGCGACACCGCCAGTTCTTCCGCCGATTATTTCTCACTCCTCCGCCAAGCCCCACCATTCGTTTTCTTCCGTATTAGACTCCAATTCTATGTCCCAAGATTATCATCAAGGAATCTTCACCTTCTCGAATGGGTTCGAGAGATCCTCTCTAACTCAGCAGCAGCAGCAACAGTTAGCGCAGCAGATCCGTAGAGATAAGGTGAGGGTGCAAGGCGGGTTGGACCCGCCGCCTCCTCTAGTGGGTATAGAGGAAGAAGAATCTGGAAACCTTCCCGTGTATGAAACCGGAGGGATGTTATCGGAGATGTTCAATTTCCCTCCTCCCGGCGCCACCGCCACTGAATTGTTGGAACAACAACATCAGCAACCGGCTGCAACGGCGATGTATCGGGCCTCCAGGCCGCCACCGGTGGCCACTGATTGGTACAGACAAGGGATGTTAAGCGGGTTGGGAGATTCAAAGAATCATCAGAATAGCCGTGACAATAGTAGTATACTAGAGCAACATCAACATCATCATCCTCAGATTTCTACCATGAACGCGGACTCAGCTGCAGCCATGCAGCTTTTTCTGCTGAACCCACAAACGAGATCGCCTTCTCCTACTACTCAGAACCACACTACTCCTAATTCAACTTCTCTCCAAGGCTTCAGTACTCATCAAGGAGGGGGTTTCGGTCAATTCGCATGGCTTCCCCATAGTTCTCAGCAAGGAGCACCGGCCACGGCCGGTAATCCACCTCAAATTGGAGGGGTTATGGAAGGTCAAGGTCTTTCCTTATCGTTATCGTCGTCGTTGCAACACTTGGAAGCTGCGAAAGCTGAGGAATTGAGGATGGGAGACAGCGGGTTTCTGTATTACAATCAAGGATCCGGAGGGTCTTCGTCTGCTCAGTATCCGTACAAGACATTGCATTTCCAAGGGTCCGTCGGAGCCGGCCAGAACCACCAGGGACATGTCGGGTTCGGGTCATCATTAGGGGTGGTGAATGTGCTGAGGAATTCAAAGTACGTGAAAGCTGCTCAAGAATTGCTCGAAGAATTCTGCAGCGTTGGGAGAGGACAGTTCAAGAGGAACAAGTTCACCAGACAAAACTCAAACCCTAGTTCCAACCCCGGTGGTGGTGGGGGTGGTTCTTCGTCTTCATCTAAGGATCCTCCTCCTTTGTCATCGGCCGATAGGATTGAGCATCAGAGAAGGAAGGTCAAACTTCTATCCATGCTTGACGAGGTGGATCGGAGATACAACCACTACTGCGACCAAATGCAGATGGTGGTGAACTCATTTGACATGGTGATGGGATACGGGTCGGCAGTGCCATACACGGCGTTAGCTCAGAAGGCGATGTCACGCCATTTCCGGTGCCTGAAGGACGCGATAACGGCGCAGCTGAAGCACAGTTGTGAGCTGCTTGGAGAGAAAGACGGAGCAGGAAGCTCAGGGATAACCAAAGGAGAGACCCCAAGGCTGAAACTTCTGGAACAAAGCCTGAGACAGCAGAGAGCCTTCCACCAGATGGGCATGATGGAACAAGAAGCCTGGCGACCCCAAAGAGGCCTCCCTGAGAGATCCGTCAACATTTTACGAGCCTGGCTCTTCGAGCATTTCCTTCATCCGTATCCAAGCGATGCTGATAAGCATCTGTTGGCTCGACAGACTGGCCTCTCCAGAAATCAGGTATCAAACTGGTTCATTAATGCCAGGGTTCGGCTGTGGAAACCTATGATAGAAGAAATGTACCAACAAGAACTTAAAGAAGCAGAAGGAGAAGAGAGAGAAGAAAGGAACCAAAGCAACAGCAGCAGCAGCAACCTCGCACAAACTCCAACCACAGCAGCCAAACCTTCAACAGAAGCAGCGCCACCAACATCCACAACAACAACACCAACGACGACACTCACAACAACAACAACAGCTGCTGCTGCAGCAGGCAAAAGATCCCAAATCAATGCTTCTGATAGCGACCCTTCACTCATTGCAATCAATACCCAACCCTTCTCGGAATCCCAACCACACCCCTCTTCATCTGCCATCACCACAGCTCCTACCGCCGCACTTGCCGCCACTTCTGAGGTGGCGCCACCCTCGTCTCAGTGTTATGACTCAGGCCTGCACCCTCACAGATCCATGCCTACAGACGATACGTGTCGGCATGGCAGACTCATTGCAGCAGATTACGGGACCGCCTCTGGTAATTCTGACATTGGTTCTACTCTCATTAGGTTTGGGACCACCGCCGGTGATGTTTCCCTCACCCTAGGGCTACGCCACGCCGGCAACATCCCTGTCCCTGAGAAAGCCCCTCCTTTCTCTCTTAGAGACTTCGGAGGCATTTGA 2460 0.513 MGVLSILSHPSTLRALTGKSRREGEEEDDDDEQGEDFNMGIATPPVLPPIISHSSAKPHHSFSSVLDSNSMSQDYHQGIFTFSNGFERSSLTQQQQQQLAQQIRRDKVRVQGGLDPPPPLVGIEEEESGNLPVYETGGMLSEMFNFPPPGATATELLEQQHQQPAATAMYRASRPPPVATDWYRQGMLSGLGDSKNHQNSRDNSSILEQHQHHHPQISTMNADSAAAMQLFLLNPQTRSPSPTTQNHTTPNSTSLQGFSTHQGGGFGQFAWLPHSSQQGAPATAGNPPQIGGVMEGQGLSLSLSSSLQHLEAAKAEELRMGDSGFLYYNQGSGGSSSAQYPYKTLHFQGSVGAGQNHQGHVGFGSSLGVVNVLRNSKYVKAAQELLEEFCSVGRGQFKRNKFTRQNSNPSSNPGGGGGGSSSSSKDPPPLSSADRIEHQRRKVKLLSMLDEVDRRYNHYCDQMQMVVNSFDMVMGYGSAVPYTALAQKAMSRHFRCLKDAITAQLKHSCELLGEKDGAGSSGITKGETPRLKLLEQSLRQQRAFHQMGMMEQEAWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHLLARQTGLSRNQVSNWFINARVRLWKPMIEEMYQQELKEAEGEEREERNQSNSSSSNLAQTPTTAAKPSTEAAPPTSTTTTPTTTLTTTTTAAAAAGKRSQINASDSDPSLIAINTQPFSESQPHPSSSAITTAPTAALAATSEVAPPSSQCYDSGLHPHRSMPTDDTCRHGRLIAADYGTASGNSDIGSTLIRFGTTAGDVSLTLGLRHAGNIPVPEKAPPFSLRDFGGI 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0084 819 SMART prehox3 367 503 IPR006563 -
Lele53g0084 819 MobiDBLite consensus disorder prediction 400 437 - -
Lele53g0084 819 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 226 641 - -
Lele53g0084 819 MobiDBLite consensus disorder prediction 235 260 - -
Lele53g0084 819 Pfam Homeobox KN domain 572 611 IPR008422 GO:0003677|GO:0006355
Lele53g0084 819 SMART HOX_1 555 619 IPR001356 GO:0003677
Lele53g0084 819 MobiDBLite consensus disorder prediction 639 738 - -
Lele53g0084 819 MobiDBLite consensus disorder prediction 400 429 - -
Lele53g0084 819 FunFam BEL1-like homeodomain protein 4 558 620 - -
Lele53g0084 819 MobiDBLite consensus disorder prediction 189 218 - -
Lele53g0084 819 Gene3D - 558 620 - -
Lele53g0084 819 MobiDBLite consensus disorder prediction 625 747 - -
Lele53g0084 819 ProSiteProfiles 'Homeobox' domain profile. 552 615 IPR001356 GO:0003677
Lele53g0084 819 SUPERFAMILY Homeodomain-like 557 622 IPR009057 -
Lele53g0084 819 CDD homeodomain 555 616 IPR001356 GO:0003677
Lele53g0084 819 Pfam Associated with HOX 372 502 IPR006563 -
Lele53g0084 819 Coils Coil 618 638 - -
Lele53g0084 819 MobiDBLite consensus disorder prediction 191 218 - -
Lele53g0084 819 MobiDBLite consensus disorder prediction 1 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0084 Lele-ChrLele53 640629 647493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0084 65 602 Homeobox Transcription Factor Family AT4G36870 49.752 2.03e-142 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lele53g0084 POX 2.3e-52 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0220 50 1314140 1317007 Lele53g0084 53 640629 647493 CCT
Lele51g0222 51 1250269 1253880 Lele53g0084 53 640629 647493 CCT
Lele52g0224 52 1333948 1336842 Lele53g0084 53 640629 647493 CCT
Lele53g0084 53 640629 647493 Lele53g0084 53 640629 647493 ECH
Lele53g0084 53 640629 647493 Lele54g0085 54 710039 719138 ECH