Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0083 ATGAGACAGCGCGTGGGACCACGGATTGCAAGCGAGAGTTACCAAAGATATGAACTTGTACTTGAGCTCCGGTTCTTAACATTCCTTACTCTCTCCAGATTCCTAATCTCTTCCTGGAATAAGTTAGCTGATCTGCACGCAATAATAATAATCCATATTATGGGTTGGTTTACAAAGTTGATTAAGGGCTCCAACAATAAAATTTCAAGGGGTCAATATCATGGGAAATATGGAAATGGCAAAATTTGGGATGACCATCGTAATTCAGTGGATGATTTGACTGATATTGAAAAAGAAGACATTGATCATGCAATTGCACTCTCTCTATCAGAGGAGGATTGGAAAGGGAAAAAGGTTATTGAGTATGACTCAGAGTCAGAAGATGAAGAACTTTGTCCAATTGATGAGGAGGAAGATGAACATCTCAGTAAAGTTCATAAAGAGGAAGCTGAGAGTCTTGATAACATTCAAAAGGATGAAGATGAACATCATGCAAAACTTCAACTTGAGGAAGATGAACAACTTGCGAGAGCAATTCAAGAAAGTTTAAGCATGGGTTCTCCTCCTCGATATGACACGGGTTCTTTATTTCAACCATTTCCTCTATTTTCCACTGGATACAGGATCTGTGCTGGCTGCAATTCTGAGATTGGCCATGGAAGATTTTTAAGCTGTATGGGAGGCGTCTGGCATCCAGAATGTTTCCGTTGTCAAGCTTGCAATCTTCCAATTACTGATTATGAGTTTTCCATGTCTAGCAATCGCGCTTACCACAAATCCTGCTACAGGGAGCAGCATCACCCAAAATGTGATGTTTGCAAGAATTTTATTCCAACAAATTCAGCTGGACTCATTGAATATAGAGCACATCCTTTCTGGCTACAAAAATACTGTCCATCACATGAGCGTGATGGCACTCCTCGCTGTTGTAGCTGTGAAAGAATGGAGTCGAGGGATGCAAAATATCTTTTGCTGGATGATGGCCGGAAGCTATGTCTAGAGTGTCTAGACTCTGCAATAATGGATACTCATGAATGCCAGCCACTTTATCTTGAAATACAAGAGTTCTATGAAGGTTTAAACATGAAATTGGAGCAGCAAATTCCCATGCTTTTGGTCGAGAGACAAGCACTAAATGAGGCCATGGAGGGAGAAAAGAATGGCCATCACCACTTACCTGAAACTAGAGGGCTTTGCTTGTCGGAAGAGCAGACTGTGACCACTATTTTAAGGAGACCAAAGATCGGAGCAGGCTACCGAATCATGGACATGATAACTGAACCTTATAGGCTGATCCGTCGCTGTGAAGTTACTGCCATTCTTGTTTTATATGGCCTTCCAAGGTTGTTAACTGGATCAATCCTTGCTCATGAGATGATGCATGCATGGCTCAGGCTTAAAGGTTACCCCAATCTGAGCCCCGAAGTTGAAGAAGGAATTTGCCAAGTTTTGGCTCATATGTGGTTAGATTCAGAAATATATTCTGGATCTGGGAGCGATGGGGCATCATCCTCCTCATCGTCATCATCATCCTCACCTTCCTCGTCTTCCTCCACGTCGTCAAAGAAGGGCAAAAGGTCCGACTTTGAGAAGAAACTGGGTGAGTTTTTTAAACACCAGATTGAGTCAGATACCTCATCAGCTTATGGAGATGGATTCAGATTGGGTAACCAGGCAGTGGTCAAGTATGGGCTCAGAAGGACCCTTGACCATATCCAACTGACAGGAAGTTTTCCAGTATGA 1743 0.4246 MRQRVGPRIASESYQRYELVLELRFLTFLTLSRFLISSWNKLADLHAIIIIHIMGWFTKLIKGSNNKISRGQYHGKYGNGKIWDDHRNSVDDLTDIEKEDIDHAIALSLSEEDWKGKKVIEYDSESEDEELCPIDEEEDEHLSKVHKEEAESLDNIQKDEDEHHAKLQLEEDEQLARAIQESLSMGSPPRYDTGSLFQPFPLFSTGYRICAGCNSEIGHGRFLSCMGGVWHPECFRCQACNLPITDYEFSMSSNRAYHKSCYREQHHPKCDVCKNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMESRDAKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKLEQQIPMLLVERQALNEAMEGEKNGHHHLPETRGLCLSEEQTVTTILRRPKIGAGYRIMDMITEPYRLIRRCEVTAILVLYGLPRLLTGSILAHEMMHAWLRLKGYPNLSPEVEEGICQVLAHMWLDSEIYSGSGSDGASSSSSSSSSSPSSSSSTSSKKGKRSDFEKKLGEFFKHQIESDTSSAYGDGFRLGNQAVVKYGLRRTLDHIQLTGSFPV 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0083 580 Pfam LIM domain 210 265 IPR001781 -
Lele53g0083 580 Pfam Protein DA1 359 574 IPR022087 -
Lele53g0083 580 CDD LIM_DA1 210 262 - -
Lele53g0083 580 MobiDBLite consensus disorder prediction 499 526 - -
Lele53g0083 580 PANTHER PROTEIN DA1-RELATED 2 56 579 IPR045218 -
Lele53g0083 580 ProSiteProfiles LIM domain profile. 208 268 IPR001781 -
Lele53g0083 580 Coils Coil 153 173 - -
Lele53g0083 580 SMART uim 96 115 IPR003903 -
Lele53g0083 580 SMART uim 170 189 IPR003903 -
Lele53g0083 580 Gene3D Cysteine Rich Protein 202 268 - -
Lele53g0083 580 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 236 291 - -
Lele53g0083 580 SMART lim_4 209 261 IPR001781 -
Lele53g0083 580 FunFam Protein DA1-related 1 204 263 - -
Lele53g0083 580 MobiDBLite consensus disorder prediction 499 522 - -
Lele53g0083 580 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 170 189 IPR003903 -
Lele53g0083 580 ProSitePatterns LIM zinc-binding domain signature. 210 244 IPR001781 -
Lele53g0083 580 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 203 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0083 Lele-ChrLele53 614367 621179 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele53g0083 DA1-like 1.8e-106 CL0126