Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0079 ATGGAGATGCAGCCAGACTGGTTTTCGGCTTCCAAGATTTGGATAGATCACAACACTCTCTACAGATGCTTAGATGGCCTTCTGGACGTCACGAGAGGTTCCACCGACGTGACAGTGTCCAATAACTGGCTCAGAGATCAAGACGAGGCTATGCTTCTTGGCTACGACGATGGCTACGTCAGAGGTGACGTGGAGAAAAAGTAG 204 0.5 MEMQPDWFSASKIWIDHNTLYRCLDGLLDVTRGSTDVTVSNNWLRDQDEAMLLGYDDGYVRGDVEKK 67
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0079 67 PANTHER PECTATE LYASE 18-RELATED 8 61 IPR045032 GO:0030570
Lele53g0079 67 SUPERFAMILY Pectin lyase-like 7 61 IPR011050 -
Lele53g0079 67 Gene3D - 4 66 IPR012334 -
Lele53g0079 67 Pfam Pectate lyase 16 57 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0079 Lele-ChrLele53 601431 601634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0079 9 61 Polysaccharide Lyase AT5G09280 77.358 4.51e-25 92.0