Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0052 ATGTCTGGTTGCAGCAGCTTCGAGGGGCACGTGATGGGAGAGTGCTCATGTGGTGTGTTTCACAGCCACTCCAATTCCTTTCCTATGCTATGCACCAACCAAAATTCCTATGCCTATGACTACGACGAATCCGACATGTATTCTTCCTACACTCCCTCTTCCTCTTCCGTCGACTGCACTCTCTCTCTCGGCACACCTTCCACTCGCTTGACTCATGAGGAAGACAGGCGTGGCGGCCGCAACAATGAACGACGTCGCTCCGTCTCCAACATGTGCGGGGATTTATCACAGTCCAATCAATCCCACAGTAGTGGCAAGTCCGGCAAAGGCGGCTCCTCCTCCAATGATCCCCTCCTCGCTCGTCGCTGTGCTAATTGCGACACCACTTCCACGCCCCTCTGGAGAAATGGCCCCAGAGGCCCCAAGTCACTATGCAATGCCTGTGGGATCAGATACAAGAAGGAAGAGAGGAGAGCCTCCGCTGCCGCCGCCGCCGCGGCTTCGGCGTCGGGCGGCGTTATGGAGTCTCAGGCGATGTACGGCCACCAGGACAATTACTGGTACGGGCAGTCGTACTCACAGGGCCAGATAATGCCGTGTTACTCGCCGGGAATGGTGGAAGACGGCAACGGAGAGTCTGAAAACGGCATGTCTTTCCTCTCGTGGAGACTCAACGTAACAGACAGAACGAGCCTCGTTCATGACTTTACGAGATGA 717 0.5579 MSGCSSFEGHVMGECSCGVFHSHSNSFPMLCTNQNSYAYDYDESDMYSSYTPSSSSVDCTLSLGTPSTRLTHEEDRRGGRNNERRRSVSNMCGDLSQSNQSHSSGKSGKGGSSSNDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRYKKEERRASAAAAAAASASGGVMESQAMYGHQDNYWYGQSYSQGQIMPCYSPGMVEDGNGESENGMSFLSWRLNVTDRTSLVHDFTR 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0052 238 MobiDBLite consensus disorder prediction 85 114 - -
Lele53g0052 238 ProSitePatterns GATA-type zinc finger domain. 123 148 IPR000679 GO:0006355|GO:0043565
Lele53g0052 238 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 120 158 - -
Lele53g0052 238 PANTHER GATA TRANSCRIPTION FACTOR 18 12 238 IPR044272 GO:0003700|GO:0009908
Lele53g0052 238 Pfam GATA zinc finger 123 157 IPR000679 GO:0006355|GO:0043565
Lele53g0052 238 SMART GATA_3 117 169 IPR000679 GO:0006355|GO:0043565
Lele53g0052 238 MobiDBLite consensus disorder prediction 69 84 - -
Lele53g0052 238 CDD ZnF_GATA 122 154 IPR000679 GO:0006355|GO:0043565
Lele53g0052 238 Gene3D - 119 177 IPR013088 GO:0006355|GO:0008270
Lele53g0052 238 ProSiteProfiles GATA-type zinc finger domain profile. 117 153 IPR000679 GO:0006355|GO:0043565
Lele53g0052 238 MobiDBLite consensus disorder prediction 52 116 - -
Lele53g0052 238 MobiDBLite consensus disorder prediction 52 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0052 Lele-ChrLele53 407137 407976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0052 16 238 C2C2-Gata Transcription Factor Family AT3G50870 41.053 1.56e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele53g0052 GATA 6.6e-18 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0178 50 1040212 1050913 Lele53g0052 53 407137 407976 CCT
Lele51g0173 51 991765 1000252 Lele53g0052 53 407137 407976 CCT
Lele52g0176 52 1048549 1059126 Lele53g0052 53 407137 407976 CCT
Lele49g0159 49 953883 954746 Lele53g0052 53 407137 407976 CCT
Lele53g0052 53 407137 407976 Lele53g0052 53 407137 407976 ECH
Lele53g0052 53 407137 407976 Lele55g1445 55 20663817 20664654 hybridization
Lele53g0052 53 407137 407976 Lele56g1380 56 16919213 16920045 hybridization