Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0047 ATGGATCCCACAGAGTTCCTTGAAACGAACGGTGTACAATTATCACATATCTCACGGGCACGTTACTCTAAAATGATGACTGCTCAGTATGCTCTAGCTGCTTTGTCTATATTCACTGGTACAAAAGGCCTCCAGGATGACCCAGCTATTTCTTCTCTCTTTCGTCGATCGAGTCCCGAACCTCCATATCGTCATCGAACTACCTACAATTTTATCAAGTGGTTAAGCATCAATATTGGTTTAACGGAGAAGAAGAGGCTTGGTTCTGTTGTAGTTATTATCACCTTAAGCCGAGTGGATACAGCACCAAATATCCGCTCCTTTAAGGTCCATCGTAAAATGTGCACTGAGTTATTGAGATTAGTTGATAGAATCTCTAGGATATTCCCAGATATTGATGCAGCACGTCCTCGATGCTCATCAGGACTACAATCTCTGTGCTTGCTAAATTGTGCAGTTGATAAAGCCAAACTTCTTCTTCAGCATTGCTGCGAGTCTAGCAAACTCTACCTGGCTGTGACGGGAGATACAGTACTCTCAAGATTCCAAAAAGCAAGAAAATCATTGGAGCAAAGCTTAGGCCAAGTTCAGAGCATCGTTCCAGTTATGTTGGCTGCAGAGATTTCTCAAATAATTGATAATCTTGCATGCATGACTATTGTATTGGACTCAGCTGAAGAAGAGGCTGGGAGGGTTGTAAAGGAGTTACTTCAGCAAGGTTCTTCAACCTCAGACTCTATTGAAAATTCTGAAATTAAAGCTCTTCAGTTTGCTGCAGCAAGACTTAATATCACATCCCCAAAGGCTATCTTAATAGAGAAACGATCTATTAAGAAGCTGCTAGATAAACTTGGATCAAATGATCAGACAAAAAAGATGATCTTGGGATATCTCTTGTATCTATTGAAGAAGTATGGAAACTTTATCACAGGAGAACAGATGGAAATGGTCTATCCTTATAGTGAAGGATCAATTGTACCTGAAAACAGCGGCCGTCATTCTCGACATATCCATTATGTTGAACCAGAAAGATGCCATAATTATGATCAGTATGAAACTCACAACTGTGAGATGGGTAGAGTAGAACCACCAGAGGAATACAAATGTCCAATATCTTCAAGATTAATGAATGATCCTGTTGTTATTGCTTCTGGAGCAACATATGAAAGAATGTGGATACAAAAGTGGTTTGATGAGGGCAATGATACATGTCCAAAAACCAGGAAGAAACTGTCCCATTTGTCGTTGACTCCAAACACTGTTATGAAGGACTTAATATCTAAGTGGTGCAGAAATAATGGAGTTACACTTGCTGAGCCTCAACATCGAGCAAAAGAATTTCACTCATGGGAGGTTTCTTCAACTTCTATTAGGAGCTTTGGAAGTTCTATGAATGATCTGCACTTGCCACTAGATCTTAGTAGCATGTCAATTGGATCATTAGATTATAGTCAAGGTTCTGATTCCTCACATGCTAGGATCACTACTGACTTAAATTTGATGTCGAAGAAGGCCAATGACAATTCTTGGAGTGCTCAACTTAATGTGCATTTGCATGACACCGATCTGATAATTTTGTCTAAATTCCATGACCTTGAATGGGATTCTCAATGCCAGGCCATTAAAGATCTGAGAGATCGTTCGAAATGCAATTGCCAAGCTTCTTGTTCCGTGTCTTCTGAAAATTTGGTTGAACTTCTTAACAGATTTTTGAGAAGTGCATATGAGCATCAAGATGTAAAAGCTCTGAGAACCGGCACTCAGTTGTTGATGGAATTTGTGAATAACTGCGGAAAGGATCTATCTTATTTAAGAGAAGATACATTTGGCATGTTGGCAAGTTTCCTTGATTTGGAAGTGATAGGTGAAGCTCTTTCTATAATGGAAAAACTATCCGCAAATCAGCACAACAAAGCTACAATTGCAACATCCAGTGTGCTCACTCCAATCTTAAAGATCCTGGGCTCTGACAGCAGAGAGTTCCAAGAACAAGCTATCAGAATATTGCATAATTTGTCTTGCAACAGTGAAAATTGCTCCCACATGGCATCTTTCGGGTGCATCCCGAAATTACTGCCCTTTTTCGAGGACCAGGCCCTTTTAAGATACTGTATATGTACATTGAAAAACCTTTGTGATATTGAGGTGGGCAGGGTTTCTGTTGCGGGAACTAATGGATGCATATCTACAGTTGCTGAGATACTTGACACTGGCAGTGTTGAGGAACAGGAGCATGCACTTTCTGTTTTACTCTCTTTATGCTCTCAACGTGAAGATTATTGTCAGTTGGTCATGTATGAGGGTGTTATCCCTTCTCTTGTCACTATCTCCATCAATGGAAGTGACAATGGAAAGGTGAGTGCATTGGAATTGCTCCGTCTCCTGGGGGATGTTCAATACGAAGAAGAGTCCATGAAACCAAGAATTGACACCCAAGGTTCTAACGATCATTCTCAAGAAAAGAAATCGTCAAGGACCTCTGGATTTCTGAAGAAACTATCACTATTCTCAAAAAGCAAGAGATGA 2526 0.4022 MDPTEFLETNGVQLSHISRARYSKMMTAQYALAALSIFTGTKGLQDDPAISSLFRRSSPEPPYRHRTTYNFIKWLSINIGLTEKKRLGSVVVIITLSRVDTAPNIRSFKVHRKMCTELLRLVDRISRIFPDIDAARPRCSSGLQSLCLLNCAVDKAKLLLQHCCESSKLYLAVTGDTVLSRFQKARKSLEQSLGQVQSIVPVMLAAEISQIIDNLACMTIVLDSAEEEAGRVVKELLQQGSSTSDSIENSEIKALQFAAARLNITSPKAILIEKRSIKKLLDKLGSNDQTKKMILGYLLYLLKKYGNFITGEQMEMVYPYSEGSIVPENSGRHSRHIHYVEPERCHNYDQYETHNCEMGRVEPPEEYKCPISSRLMNDPVVIASGATYERMWIQKWFDEGNDTCPKTRKKLSHLSLTPNTVMKDLISKWCRNNGVTLAEPQHRAKEFHSWEVSSTSIRSFGSSMNDLHLPLDLSSMSIGSLDYSQGSDSSHARITTDLNLMSKKANDNSWSAQLNVHLHDTDLIILSKFHDLEWDSQCQAIKDLRDRSKCNCQASCSVSSENLVELLNRFLRSAYEHQDVKALRTGTQLLMEFVNNCGKDLSYLREDTFGMLASFLDLEVIGEALSIMEKLSANQHNKATIATSSVLTPILKILGSDSREFQEQAIRILHNLSCNSENCSHMASFGCIPKLLPFFEDQALLRYCICTLKNLCDIEVGRVSVAGTNGCISTVAEILDTGSVEEQEHALSVLLSLCSQREDYCQLVMYEGVIPSLVTISINGSDNGKVSALELLRLLGDVQYEEESMKPRIDTQGSNDHSQEKKSSRTSGFLKKLSLFSKSKR 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0047 841 FunFam RING-type E3 ubiquitin transferase 362 436 - -
Lele53g0047 841 Pfam U-box domain 364 433 IPR003613 GO:0004842|GO:0016567
Lele53g0047 841 MobiDBLite consensus disorder prediction 805 827 - -
Lele53g0047 841 CDD RING-Ubox_PUB 367 409 IPR045210 -
Lele53g0047 841 MobiDBLite consensus disorder prediction 805 841 - -
Lele53g0047 841 Gene3D - 530 814 IPR011989 -
Lele53g0047 841 ProSiteProfiles U-box domain profile. 362 436 IPR003613 GO:0004842|GO:0016567
Lele53g0047 841 SUPERFAMILY RING/U-box 353 437 - -
Lele53g0047 841 SUPERFAMILY ARM repeat 611 800 IPR016024 -
Lele53g0047 841 PANTHER U BOX DOMAIN-CONTAINING 113 802 - -
Lele53g0047 841 SMART arm_5 675 713 IPR000225 GO:0005515
Lele53g0047 841 SMART arm_5 757 797 IPR000225 GO:0005515
Lele53g0047 841 SMART arm_5 634 674 IPR000225 GO:0005515
Lele53g0047 841 SMART Ubox_2 366 429 IPR003613 GO:0004842|GO:0016567
Lele53g0047 841 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 361 437 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0047 Lele-ChrLele53 366582 371463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0047 98 814 U-box Gene Family AT4G36550 37.123 1.04e-135 419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0169 50 994012 995116 Lele53g0047 53 366582 371463 CCT
Lele49g0149 49 897070 899292 Lele53g0047 53 366582 371463 CCT
Lele53g0047 53 366582 371463 Lele53g0047 53 366582 371463 ECH
Lele53g0047 53 366582 371463 Lele54g0046 54 400435 404068 ECH
Lele53g0047 53 366582 371463 Lele55g1451 55 20707424 20710931 hybridization
Lele53g0047 53 366582 371463 Lele56g1383 56 16947839 16951443 hybridization