LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele53g0047	ATGGATCCCACAGAGTTCCTTGAAACGAACGGTGTACAATTATCACATATCTCACGGGCACGTTACTCTAAAATGATGACTGCTCAGTATGCTCTAGCTGCTTTGTCTATATTCACTGGTACAAAAGGCCTCCAGGATGACCCAGCTATTTCTTCTCTCTTTCGTCGATCGAGTCCCGAACCTCCATATCGTCATCGAACTACCTACAATTTTATCAAGTGGTTAAGCATCAATATTGGTTTAACGGAGAAGAAGAGGCTTGGTTCTGTTGTAGTTATTATCACCTTAAGCCGAGTGGATACAGCACCAAATATCCGCTCCTTTAAGGTCCATCGTAAAATGTGCACTGAGTTATTGAGATTAGTTGATAGAATCTCTAGGATATTCCCAGATATTGATGCAGCACGTCCTCGATGCTCATCAGGACTACAATCTCTGTGCTTGCTAAATTGTGCAGTTGATAAAGCCAAACTTCTTCTTCAGCATTGCTGCGAGTCTAGCAAACTCTACCTGGCTGTGACGGGAGATACAGTACTCTCAAGATTCCAAAAAGCAAGAAAATCATTGGAGCAAAGCTTAGGCCAAGTTCAGAGCATCGTTCCAGTTATGTTGGCTGCAGAGATTTCTCAAATAATTGATAATCTTGCATGCATGACTATTGTATTGGACTCAGCTGAAGAAGAGGCTGGGAGGGTTGTAAAGGAGTTACTTCAGCAAGGTTCTTCAACCTCAGACTCTATTGAAAATTCTGAAATTAAAGCTCTTCAGTTTGCTGCAGCAAGACTTAATATCACATCCCCAAAGGCTATCTTAATAGAGAAACGATCTATTAAGAAGCTGCTAGATAAACTTGGATCAAATGATCAGACAAAAAAGATGATCTTGGGATATCTCTTGTATCTATTGAAGAAGTATGGAAACTTTATCACAGGAGAACAGATGGAAATGGTCTATCCTTATAGTGAAGGATCAATTGTACCTGAAAACAGCGGCCGTCATTCTCGACATATCCATTATGTTGAACCAGAAAGATGCCATAATTATGATCAGTATGAAACTCACAACTGTGAGATGGGTAGAGTAGAACCACCAGAGGAATACAAATGTCCAATATCTTCAAGATTAATGAATGATCCTGTTGTTATTGCTTCTGGAGCAACATATGAAAGAATGTGGATACAAAAGTGGTTTGATGAGGGCAATGATACATGTCCAAAAACCAGGAAGAAACTGTCCCATTTGTCGTTGACTCCAAACACTGTTATGAAGGACTTAATATCTAAGTGGTGCAGAAATAATGGAGTTACACTTGCTGAGCCTCAACATCGAGCAAAAGAATTTCACTCATGGGAGGTTTCTTCAACTTCTATTAGGAGCTTTGGAAGTTCTATGAATGATCTGCACTTGCCACTAGATCTTAGTAGCATGTCAATTGGATCATTAGATTATAGTCAAGGTTCTGATTCCTCACATGCTAGGATCACTACTGACTTAAATTTGATGTCGAAGAAGGCCAATGACAATTCTTGGAGTGCTCAACTTAATGTGCATTTGCATGACACCGATCTGATAATTTTGTCTAAATTCCATGACCTTGAATGGGATTCTCAATGCCAGGCCATTAAAGATCTGAGAGATCGTTCGAAATGCAATTGCCAAGCTTCTTGTTCCGTGTCTTCTGAAAATTTGGTTGAACTTCTTAACAGATTTTTGAGAAGTGCATATGAGCATCAAGATGTAAAAGCTCTGAGAACCGGCACTCAGTTGTTGATGGAATTTGTGAATAACTGCGGAAAGGATCTATCTTATTTAAGAGAAGATACATTTGGCATGTTGGCAAGTTTCCTTGATTTGGAAGTGATAGGTGAAGCTCTTTCTATAATGGAAAAACTATCCGCAAATCAGCACAACAAAGCTACAATTGCAACATCCAGTGTGCTCACTCCAATCTTAAAGATCCTGGGCTCTGACAGCAGAGAGTTCCAAGAACAAGCTATCAGAATATTGCATAATTTGTCTTGCAACAGTGAAAATTGCTCCCACATGGCATCTTTCGGGTGCATCCCGAAATTACTGCCCTTTTTCGAGGACCAGGCCCTTTTAAGATACTGTATATGTACATTGAAAAACCTTTGTGATATTGAGGTGGGCAGGGTTTCTGTTGCGGGAACTAATGGATGCATATCTACAGTTGCTGAGATACTTGACACTGGCAGTGTTGAGGAACAGGAGCATGCACTTTCTGTTTTACTCTCTTTATGCTCTCAACGTGAAGATTATTGTCAGTTGGTCATGTATGAGGGTGTTATCCCTTCTCTTGTCACTATCTCCATCAATGGAAGTGACAATGGAAAGGTGAGTGCATTGGAATTGCTCCGTCTCCTGGGGGATGTTCAATACGAAGAAGAGTCCATGAAACCAAGAATTGACACCCAAGGTTCTAACGATCATTCTCAAGAAAAGAAATCGTCAAGGACCTCTGGATTTCTGAAGAAACTATCACTATTCTCAAAAAGCAAGAGATGA	2526	0.4022	MDPTEFLETNGVQLSHISRARYSKMMTAQYALAALSIFTGTKGLQDDPAISSLFRRSSPEPPYRHRTTYNFIKWLSINIGLTEKKRLGSVVVIITLSRVDTAPNIRSFKVHRKMCTELLRLVDRISRIFPDIDAARPRCSSGLQSLCLLNCAVDKAKLLLQHCCESSKLYLAVTGDTVLSRFQKARKSLEQSLGQVQSIVPVMLAAEISQIIDNLACMTIVLDSAEEEAGRVVKELLQQGSSTSDSIENSEIKALQFAAARLNITSPKAILIEKRSIKKLLDKLGSNDQTKKMILGYLLYLLKKYGNFITGEQMEMVYPYSEGSIVPENSGRHSRHIHYVEPERCHNYDQYETHNCEMGRVEPPEEYKCPISSRLMNDPVVIASGATYERMWIQKWFDEGNDTCPKTRKKLSHLSLTPNTVMKDLISKWCRNNGVTLAEPQHRAKEFHSWEVSSTSIRSFGSSMNDLHLPLDLSSMSIGSLDYSQGSDSSHARITTDLNLMSKKANDNSWSAQLNVHLHDTDLIILSKFHDLEWDSQCQAIKDLRDRSKCNCQASCSVSSENLVELLNRFLRSAYEHQDVKALRTGTQLLMEFVNNCGKDLSYLREDTFGMLASFLDLEVIGEALSIMEKLSANQHNKATIATSSVLTPILKILGSDSREFQEQAIRILHNLSCNSENCSHMASFGCIPKLLPFFEDQALLRYCICTLKNLCDIEVGRVSVAGTNGCISTVAEILDTGSVEEQEHALSVLLSLCSQREDYCQLVMYEGVIPSLVTISINGSDNGKVSALELLRLLGDVQYEEESMKPRIDTQGSNDHSQEKKSSRTSGFLKKLSLFSKSKR	841

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele53g0047	841	FunFam	RING-type E3 ubiquitin transferase	362	436	-	-
	Lele53g0047	841	Pfam	U-box domain	364	433	IPR003613	GO:0004842\|GO:0016567
	Lele53g0047	841	MobiDBLite	consensus disorder prediction	805	827	-	-
	Lele53g0047	841	CDD	RING-Ubox_PUB	367	409	IPR045210	-
	Lele53g0047	841	MobiDBLite	consensus disorder prediction	805	841	-	-
	Lele53g0047	841	Gene3D	-	530	814	IPR011989	-
	Lele53g0047	841	ProSiteProfiles	U-box domain profile.	362	436	IPR003613	GO:0004842\|GO:0016567
	Lele53g0047	841	SUPERFAMILY	RING/U-box	353	437	-	-
	Lele53g0047	841	SUPERFAMILY	ARM repeat	611	800	IPR016024	-
	Lele53g0047	841	PANTHER	U BOX DOMAIN-CONTAINING	113	802	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele53g0047	Lele-ChrLele53	366582	371463	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele53g0047	98	814	U-box Gene Family	AT4G36550	37.123	1.04e-135	419

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele50g0169	50	994012	995116	Lele53g0047	53	366582	371463	CCT
	Lele49g0149	49	897070	899292	Lele53g0047	53	366582	371463	CCT
	Lele53g0047	53	366582	371463	Lele53g0047	53	366582	371463	ECH
	Lele53g0047	53	366582	371463	Lele54g0046	54	400435	404068	ECH
	Lele53g0047	53	366582	371463	Lele55g1451	55	20707424	20710931	hybridization
	Lele53g0047	53	366582	371463	Lele56g1383	56	16947839	16951443	hybridization

Showing 1 to 6 of 6 entries