Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0045 ATGTCGAAGCGAGGAGCAGAATGTAGGCAATGGCATAGTCGAAAAGCAAAATCACACATTGCTCCAGATGTCATCGTACCTCCAGTTGATTCTATTCAACAAGGACAGTGGGCAAATCTACCTCCAGAACTGCTTTTGGACATTATTCAGAGGGTGGAAGAGAGTGAGACAACATGGCCTGCACGTGCTGTCATTGTTTCCTGTGCTTCAGTATGTAAATCATGGAGAGACATTACAAAGGAAATTGTCAAGACTCCTGAGGAATGTGGGAGGCTAACATTTCCTGTCTCAGTGAAGCAGCCCGGTCCTCATGATGCACCAATACAGTGCTTTATCAGGAGGAACAGAGAAACTTCTACATACCACATGTATTTTGGTCTTGTGCCGTCGGAAAATGAGAGAGCCAAGTTGTTATTAGCTGCAAAAAAGATAAGAAAACCAACGGCCACAGAGTTTGTTATATCCCTTATTGCAGATGATTTTTCTCGGGCCAGCAGCACATATCTTGGTGAATTGAGGTCCAATTTTTTGGGAACCAAGTTTGCCATATTTGATAGCCAACCTCCACAGAAAGCTAGCATTCAAGCGAATAATCATTCTAGTAGTAAATTCCACTCAAAGCAGGTATCTCCTAGAGTACCAGCACGTAAATATAACGTTGCCACCATCAGTTATGAACTCAATGTTCTTCGCACGAGAGGTCCAAGAAGAATGCACTGCATTTTGAACTCCATACCCATGTGGGCTATTCAGGAAGGACTCAATGCCCCAACTCCAACAACTCTTCCGCAATTTTCTTCCTCACCAGCAGTGAAAAGAAAAGATTCAACTACAGATTTAAACTCCACAAACTTACTAGATCTACTGGCATCAAGTAAGGGCTCTGTTGATCCTCTTGTTCTTAAAAACAAGGCTCCCAGATGGCATGAGCAACTGCAATGTTGGTGCCTAAATTTCAAGGGTCGCGTGACAGTGGCTTCTGTGAAGAATTTCCAGCTTTGTGCTGTTGTTGATCCGTCTCACGATGTTCCTGCTGCAGAACAAGACAAGGTGATCTTGCAGTTTGGGAAGATTGGTAAAGACATATTCACCTTGGACTACCGATATCCTCTCTCAGCTTTTCAAGCCTTTGCCATATGCTTGAGCAGTTTCGATACTAAACCGGCTTGTGAATGA 1176 0.4354 MSKRGAECRQWHSRKAKSHIAPDVIVPPVDSIQQGQWANLPPELLLDIIQRVEESETTWPARAVIVSCASVCKSWRDITKEIVKTPEECGRLTFPVSVKQPGPHDAPIQCFIRRNRETSTYHMYFGLVPSENERAKLLLAAKKIRKPTATEFVISLIADDFSRASSTYLGELRSNFLGTKFAIFDSQPPQKASIQANNHSSSKFHSKQVSPRVPARKYNVATISYELNVLRTRGPRRMHCILNSIPMWAIQEGLNAPTPTTLPQFSSSPAVKRKDSTTDLNSTNLLDLLASSKGSVDPLVLKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLCAVVDPSHDVPAAEQDKVILQFGKIGKDIFTLDYRYPLSAFQAFAICLSSFDTKPACE 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0045 391 Pfam F-box domain 37 84 IPR001810 GO:0005515
Lele53g0045 391 Pfam Tub family 98 386 IPR000007 -
Lele53g0045 391 SUPERFAMILY F-box domain 33 80 IPR036047 GO:0005515
Lele53g0045 391 SUPERFAMILY Tubby C-terminal domain-like 86 391 IPR025659 -
Lele53g0045 391 ProSitePatterns Tub family signature 2. 376 391 IPR018066 -
Lele53g0045 391 PRINTS Tubby superfamily signature 217 244 IPR000007 -
Lele53g0045 391 PRINTS Tubby superfamily signature 369 391 IPR000007 -
Lele53g0045 391 PRINTS Tubby superfamily signature 348 367 IPR000007 -
Lele53g0045 391 PRINTS Tubby superfamily signature 301 318 IPR000007 -
Lele53g0045 391 PRINTS Tubby superfamily signature 319 335 IPR000007 -
Lele53g0045 391 PRINTS Tubby superfamily signature 168 192 IPR000007 -
Lele53g0045 391 PRINTS Tubby superfamily signature 152 168 IPR000007 -
Lele53g0045 391 Gene3D Tubby Protein; Chain A 94 391 IPR025659 -
Lele53g0045 391 PANTHER TUBBY-RELATED 29 389 - -
Lele53g0045 391 ProSitePatterns Tub family signature 1. 319 332 IPR018066 -
Lele53g0045 391 Gene3D - 30 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0045 Lele-ChrLele53 360221 362006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0045 5 391 TUB Transcription Factor Family AT2G18280 61.461 2.13e-173 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele53g0045 Tub 1.5e-104 CL0395