Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0041 ATGGCACATCACAGGATGCAATCTGTAAGGTTTGGAGAAGAAATAAAATCTTCTTCTTCGAGAATAAAACATCATAGGATTAAAAATGGCACTCTAAGTGGCAACATAAAGCAGGATCAAACATGGGAAGATAAGCATATAACTGCTTCAATAGGAAGAATCAACGAAATGGTTGCAGAGGCAAGACTTTCTAAGAATCCCCAAGGGCATACTTCATTAACAGGCTCCACAGGGTCGGTTAAATCTGGTCCTGTTTTCTTTTCAAATCCAACCGACAAGAGGATCCAAAGAACATTATCGTCGTCCATATCATCTTCATCATCATTCAATTCTAGTATCGGAATATCTGCACTGTCCAGCTCATCTGCGATGAGCGGGAAGGGCACTGGGAAGAGCGATTCTGAAGGGAAAAAACCAGAAAAGAAGAAGAAGGAGAAGGAGAAAGGAGCATTGTTTGCTTGTATGAGACAAAAGTCATGCAAGAACTCAAGAAAATCGCCGGAACGTGCAAGAGTTGATGAAGCATTGATCCTAGAGAGAGCGCGCGTGGTGGAGAGTCTGCCACAATTCTGGGCAGATAAGTACCAACCTGCTTCACTCAATGCCTTCGTTTGCCACAGAGAAGAAGCTCAACTTCTCAAGGGATTAGTGTGTCTTGATGAATTTCCACATACTTTGCTGAAAGGTCCCTCTGGTTCTGGGAAAAGAGCCTTGGCAATGGCTCTTCTGCGAGAATTATACGGCGAAGAGTGTTGGAACTTATCCCACAATATAAGATATTTCCCCTATCAGGAAGGAAGGCACAGGAAAGTAAGTGTTCCAATAACGTTCAGTCTTCATCACGTGGAACTAAACGTAAATTCGGAACCGAATGCAAAGTATGCTTTGATTGGATTAGTGAAGGAAATGAGCCGTATCTATGCAATAACACCCCAAGATCCCAATCTTAATATCAAGTCAGATTGTCAAGTGATGGTTCTCTATGAGGTTGACAAGGTAGAACACGATATCCAGCAGATAATCCAATGGATTATATACTGCCACTCTAAAACATGCAAATTAATACTCTGCTGCCAAGACGATGTTGACATTCCTGAATCTCTGAGGAACCTGTTCAAAGTCATTGAAGTACATCCCCTTACTACGCCTCAGATTATGGAGGTTCTATTTGAGATAGCAAAGAAGGAGGATATACATCTATCAAACAATTTTGCTGCTATGATTGCTGCAAAATCTAATCAGAATCTCAGGCAAGCTATCATGGCTCTTGAGGCATGCAAAGCATTCAAATATCCATTTTTGGAAGAACAACCAATTTCAATTGGATGGGAGGATGTTGTAATAGAAATTGCTTCAGAGATCATAGCCGATCCATCAAATGCATGCCAAATATCAGTAAGAGAAAATTTTCAGGAGCTTATGGAGGATTTTGTCCACCCAAAACTGATTCTCCGGAAACTAGTGGAAGAACTTCTGAAAAATATCGAAGCCAACTTAAAAAGGGAACTCTACTATTGGCATGCTTATTATGACAAAAGACTCCCACCTGGGACCATAGCTTTAACCAAGTTGGCTGAATTTGTGGCCAAGTTTATGAGCATATACAGAAAGAGCTTTGTCAGTAGGCAACATGTACGAACTGCTTACTCTAAACGAAGTAATACTCCAAAGCAAATGAAAGATAACGTTGGACTTCATCAAAAGAAAGTTCCCTTTGCTTTTCCTCCATCCCCTTTTATTTTGTGGTTCTTTTCAGTGTCTAGGCATCGGACTCTCATGAATGTATCTGACAAACCTTCAGCGGTTGATAAGGAAGCATTTTTAGTCCCTAGTGCATCCATCATTGGCGATGTTCAGATTGGGCGGGTTCTTCCATTTGGTGATGCTAACAGCGTTAGTATTGGATGTGGAACCAATATACAGGACAATTCCCTTGTCCATGTGGCTAAGTCAAATTTGAGTGGGAATGTCTTACCAACTATCATTGGAGATAATGTCACTATAGAAGCACGCCATGGTTTCTACTGGAGCCCTTGTCGGCAGAATACAAAGATTCCCTATGGAGAGGCTCAGGCTCAGGCTCAGGCTGCTGAAAATGCGAAACCATTGGATGCGGATGAATTTGAGAAGGTTGTCCGGAAGAAGTTTGCTCGACGTGATGAGGAATATGATTCAGTGCTAGTAGATGTCAGGGAAACTCGAGCAGAGCTTCCCCTTCCAAAGGCCTCTTAA 2232 0.4185 MAHHRMQSVRFGEEIKSSSSRIKHHRIKNGTLSGNIKQDQTWEDKHITASIGRINEMVAEARLSKNPQGHTSLTGSTGSVKSGPVFFSNPTDKRIQRTLSSSISSSSSFNSSIGISALSSSSAMSGKGTGKSDSEGKKPEKKKKEKEKGALFACMRQKSCKNSRKSPERARVDEALILERARVVESLPQFWADKYQPASLNAFVCHREEAQLLKGLVCLDEFPHTLLKGPSGSGKRALAMALLRELYGEECWNLSHNIRYFPYQEGRHRKVSVPITFSLHHVELNVNSEPNAKYALIGLVKEMSRIYAITPQDPNLNIKSDCQVMVLYEVDKVEHDIQQIIQWIIYCHSKTCKLILCCQDDVDIPESLRNLFKVIEVHPLTTPQIMEVLFEIAKKEDIHLSNNFAAMIAAKSNQNLRQAIMALEACKAFKYPFLEEQPISIGWEDVVIEIASEIIADPSNACQISVRENFQELMEDFVHPKLILRKLVEELLKNIEANLKRELYYWHAYYDKRLPPGTIALTKLAEFVAKFMSIYRKSFVSRQHVRTAYSKRSNTPKQMKDNVGLHQKKVPFAFPPSPFILWFFSVSRHRTLMNVSDKPSAVDKEAFLVPSASIIGDVQIGRVLPFGDANSVSIGCGTNIQDNSLVHVAKSNLSGNVLPTIIGDNVTIEARHGFYWSPCRQNTKIPYGEAQAQAQAAENAKPLDADEFEKVVRKKFARRDEEYDSVLVDVRETRAELPLPKAS 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0041 743 SUPERFAMILY Trimeric LpxA-like enzymes 597 670 IPR011004 -
Lele53g0041 743 FunFam replication factor C subunit 3 381 439 - -
Lele53g0041 743 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 428 IPR027417 -
Lele53g0041 743 Gene3D - 442 535 - -
Lele53g0041 743 MobiDBLite consensus disorder prediction 65 91 - -
Lele53g0041 743 CDD AAA 207 246 - -
Lele53g0041 743 Gene3D - 189 379 IPR027417 -
Lele53g0041 743 Gene3D - 383 433 - -
Lele53g0041 743 MobiDBLite consensus disorder prediction 1 20 - -
Lele53g0041 743 SUPERFAMILY post-AAA+ oligomerization domain-like 442 535 IPR008921 GO:0003677|GO:0006260
Lele53g0041 743 MobiDBLite consensus disorder prediction 1 21 - -
Lele53g0041 743 MobiDBLite consensus disorder prediction 131 148 - -
Lele53g0041 743 Gene3D Hexapeptide repeat proteins 586 673 - -
Lele53g0041 743 MobiDBLite consensus disorder prediction 119 148 - -
Lele53g0041 743 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 188 533 - -
Lele53g0041 743 MobiDBLite consensus disorder prediction 64 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0041 Lele-ChrLele53 341875 349970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0041 190 541 Core DNA Replication Machinery Family AT5G27740 36.517 9.90e-67 223