Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0014 ATGAGAACGCTTTGTGACTCTTGTGAGAGCGCCGCCGCCATCGTTTTCTGCGCTGCCGATGAGGCCGCTCTCTGCCGTGCCTGTGACGAGAAGGTTCATTTGTGTAATAAGCTAGCTAGCCGGCATGTAAGGGTTGGTCTGGCAAGTCCTAGCGATGTGCCTCGCTGTGACATATGTGAGAATGCACCTGCATTCTTCTATTGCGAGACAGATGGAAGTTCACTTTGCTTGCAGTGTGACATGATGGTTCATGTTGGGGGTAAAAGAACACATGGACGATATCTTCTTTTTAGGCAGCGAGTTGAGTTTCCAGGAGATAAAGCTGGTGTTCCAGAAAACTCAGCTTCTCTGTTTTTGGAACCTGGTGAGACTAAAAGAGGACAAAATTTTCTGCCTAATGTGAAAGTGGGAGAGAGACAACAAAATCATAGGTTAGCTTTGGTTGCAGCACCTGAACATGATGCTGACGGCCATGCGATGATAGAAACTAACATGATTGATTTGAACATGAAGCCTCAGAGAATACATGAACAAGCTTCCAATAATCAGTCACGTTTTGTCAAGTCAGATTCCCAGCTTGCTTTTAAGGATCATCTCCAGATAGCTTGCCTTCTTGGTTCGAAGGTCTTGTATTGTCAATTGGCTGCCTCCGAAGCAAAACAGATTGAGAAATTGAGATTAGATGTTTTAGGAGTGAAAAGTGATAATGTTTTGCAGCTGTGGTTGGTTTGTGGCAGCTCCCTTTACGCATTGAGTAGTCTTTGCAAATACAAGTTTACTTGTGTAAAGAGCTACAGCCATGGATCCGTGTGCTTGACTCATCCCGACTTAATCCCGTTTTGTAGCCATTGGTTTTGA 858 0.4464 MRTLCDSCESAAAIVFCAADEAALCRACDEKVHLCNKLASRHVRVGLASPSDVPRCDICENAPAFFYCETDGSSLCLQCDMMVHVGGKRTHGRYLLFRQRVEFPGDKAGVPENSASLFLEPGETKRGQNFLPNVKVGERQQNHRLALVAAPEHDADGHAMIETNMIDLNMKPQRIHEQASNNQSRFVKSDSQLAFKDHLQIACLLGSKVLYCQLAASEAKQIEKLRLDVLGVKSDNVLQLWLVCGSSLYALSSLCKYKFTCVKSYSHGSVCLTHPDLIPFCSHWF 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0014 285 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 169 - -
Lele53g0014 285 SMART bboxneu5 51 96 IPR000315 GO:0008270
Lele53g0014 285 SMART bboxneu5 1 47 IPR000315 GO:0008270
Lele53g0014 285 FunFam B-box zinc finger protein 19 2 92 - -
Lele53g0014 285 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Lele53g0014 285 Gene3D Classic Zinc Finger 2 91 - -
Lele53g0014 285 CDD Bbox1_BBX-like 56 96 - -
Lele53g0014 285 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lele53g0014 285 SUPERFAMILY B-box zinc-binding domain 48 86 - -
Lele53g0014 285 CDD Bbox1_BBX-like 4 47 - -
Lele53g0014 285 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Lele53g0014 285 Pfam B-box zinc finger 52 90 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0014 Lele-ChrLele53 160540 162988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0014 1 192 C2C2-CO-like Transcription Factor Family AT4G38960 58.854 5.62e-75 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lele53g0014 zf-B_box 3.6e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele53g0014 53 160540 162988 Lele53g0014 53 160540 162988 ECH