LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele53g0008	ATGGGGGCCGCTTACGGCACTGCAAAGAGTGGTGTTGGAGTTGCCTCGATGGGTGTCATGAGGCCGGAACTTGTTATGAAATCCATTGTGCCCGTTGTAATGGCTGGTGTCTTGGGTATTTATGGTTTGATCATTGCGGTCATCATTAGCACCGGAATTAACCCCAAGGCCAAATCCTATTATCTCTTCGATGGATACGCCCACCTTTCTTCCGGTATTGCTTGCGGTCTTGCTGGTCTTTCTGCTGGCATGGCCATTGGTATTGTAGGCGATGCTGGTGTTAGGGCGAATGCTCAACAGCCCAAGCTTTTTGTTGGAATGATTCTCATTCTCATCTTTGCTGAGGCATTGGCATTATATGGTCTTATTGTTGGCATCATCCTCTCGTCCCGCGCTGGCCAATCGAGAGCTGAGTAA	417	0.4916	MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGIACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE	138

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele53g0008	138	Pfam	ATP synthase subunit C	70	128	IPR002379	GO:0015078\|GO:0033177\|GO:1902600
	Lele53g0008	138	Pfam	ATP synthase subunit C	1	49	IPR002379	GO:0015078\|GO:0033177\|GO:1902600
	Lele53g0008	138	FunFam	V-type proton ATPase proteolipid subunit	1	135	-	-
	Lele53g0008	138	TIGRFAM	V_ATP_synt_C: V-type ATPase, C subunit	1	94	IPR011555	GO:0033179\|GO:0046961\|GO:1902600
	Lele53g0008	138	CDD	ATP-synt_Vo_c_ATP6C_rpt2	62	129	-	-
	Lele53g0008	138	PANTHER	V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT	1	134	-	-
	Lele53g0008	138	SUPERFAMILY	F1F0 ATP synthase subunit C	60	129	IPR035921	-
	Lele53g0008	138	CDD	ATP-synt_Vo_c_ATP6C_rpt1	1	53	-	-
	Lele53g0008	138	Gene3D	-	1	135	IPR035921	-
	Lele53g0008	138	PRINTS	Vacuolar ATP synthase 16kDa subunit signature	80	106	IPR000245	GO:0033179\|GO:0046961\|GO:1902600

Showing 1 to 10 of 13 entries

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele53g0008	Lele-ChrLele53	125818	126925	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele53g0008	1	138	Primary Pumps ATPases(2)	AT4G38920	99.275	1.68e-92	262

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele49g0097	49	595817	596472	Lele53g0008	53	125818	126925	CCT
	Lele50g0114	50	684980	685644	Lele53g0008	53	125818	126925	CCT
	Lele51g0108	51	622791	623456	Lele53g0008	53	125818	126925	CCT
	Lele53g0008	53	125818	126925	Lele55g1485	55	20964075	20965488	hybridization
	Lele53g0008	53	125818	126925	Lele56g1416	56	17203362	17204673	hybridization

Showing 1 to 5 of 5 entries