Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0008 ATGGGGGCCGCTTACGGCACTGCAAAGAGTGGTGTTGGAGTTGCCTCGATGGGTGTCATGAGGCCGGAACTTGTTATGAAATCCATTGTGCCCGTTGTAATGGCTGGTGTCTTGGGTATTTATGGTTTGATCATTGCGGTCATCATTAGCACCGGAATTAACCCCAAGGCCAAATCCTATTATCTCTTCGATGGATACGCCCACCTTTCTTCCGGTATTGCTTGCGGTCTTGCTGGTCTTTCTGCTGGCATGGCCATTGGTATTGTAGGCGATGCTGGTGTTAGGGCGAATGCTCAACAGCCCAAGCTTTTTGTTGGAATGATTCTCATTCTCATCTTTGCTGAGGCATTGGCATTATATGGTCTTATTGTTGGCATCATCCTCTCGTCCCGCGCTGGCCAATCGAGAGCTGAGTAA 417 0.4916 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGIACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0008 138 Pfam ATP synthase subunit C 70 128 IPR002379 GO:0015078|GO:0033177|GO:1902600
Lele53g0008 138 Pfam ATP synthase subunit C 1 49 IPR002379 GO:0015078|GO:0033177|GO:1902600
Lele53g0008 138 FunFam V-type proton ATPase proteolipid subunit 1 135 - -
Lele53g0008 138 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 1 94 IPR011555 GO:0033179|GO:0046961|GO:1902600
Lele53g0008 138 CDD ATP-synt_Vo_c_ATP6C_rpt2 62 129 - -
Lele53g0008 138 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 1 134 - -
Lele53g0008 138 SUPERFAMILY F1F0 ATP synthase subunit C 60 129 IPR035921 -
Lele53g0008 138 CDD ATP-synt_Vo_c_ATP6C_rpt1 1 53 - -
Lele53g0008 138 Gene3D - 1 135 IPR035921 -
Lele53g0008 138 PRINTS Vacuolar ATP synthase 16kDa subunit signature 80 106 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lele53g0008 138 PRINTS Vacuolar ATP synthase 16kDa subunit signature 107 130 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lele53g0008 138 PRINTS Vacuolar ATP synthase 16kDa subunit signature 3 27 IPR000245 GO:0033179|GO:0046961|GO:1902600
Lele53g0008 138 PRINTS Vacuolar ATP synthase 16kDa subunit signature 29 53 IPR000245 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0008 Lele-ChrLele53 125818 126925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele53g0008 1 138 Primary Pumps ATPases(2) AT4G38920 99.275 1.68e-92 262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0097 49 595817 596472 Lele53g0008 53 125818 126925 CCT
Lele50g0114 50 684980 685644 Lele53g0008 53 125818 126925 CCT
Lele51g0108 51 622791 623456 Lele53g0008 53 125818 126925 CCT
Lele53g0008 53 125818 126925 Lele55g1485 55 20964075 20965488 hybridization
Lele53g0008 53 125818 126925 Lele56g1416 56 17203362 17204673 hybridization