Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1736 ATGTCAGGGTCCAATGCAGTGGCCAATGGGTTGGCCGGGGCAGGCGGTGGCATTATTGCTCAAATCATAACTTATCCTCTTCAAACGGTAAATACTCGCCAGCAAACCGAGAGAACCCTCAAGGGCAAGAAGCTGGGCCTTCCTCGTTCCACTAACACGCTTCTTCAGATCCTTCAGGTTATTAAAACCGAGAGGTGGGGCGGACTATACAGTGGCCTCAAGCCTTCTCTCCTTGGCATTGCTGCTTCTCAGGGCATTTACTACTACTTTTATCAAGTTTTTAAAAATAAGGCTGTGGCCATTGCTGCCGCCCGCAAAGTCAAAGGACATGGAGATGGAACTGTTGGCATGCTTGGCTGGCTTGTTGTGGCTGCTATTGCTGGGTCCTTGAATGTTTTGTTTACAAATCCAATATGGGTTATAGTGACTCGCATGCAGACACATACTCAAGCAGAAAGAAAAATTACGGAGGGAAAGAAAGAAGCTTTACGCAGAGAAGCGTCAGAATGCAGTTCTGCCGATTCAACATTACAAGAAAAATTAGCTGAACTGGAATCTATAAAACCTCAACCATATGGAACTTTACATGCAATGCTCCATTATCTATGCCGTACACAGCAAATGACTTTGATTTACCTCCCGATACACAATTGTATTGTTGGATTTTGGAAGGGTGTCATCCCTTCTTTGATTATGGTGTGCAATCCGTCAATCCAGTTTATGATTTATGAGAGCTCGTTGAAGCAGTTAAAGGAAAAACGTGCAGCTAAGAATCAGGGGAATAAAAATGTAACTGCTTTTGAGGTCTTTCTTCTGGGAGCCTTAGCAAAACTTGGAGCTACTGTCTCAACATATCCCCTGTTGGTTGTCAAGGAGGAACTTGTTAAAGCTTACATGGCGTTGGCAGATAAGAATGCCCGCCATCTCATGAGACAAAGAACAGAAGAAATGGCTTCACTATCCTCCAAAACCCTAATGGATCTGTACCAGCCAGTTTCTAAGCGATTGAAACCCAATGTCACCCCAATCAGGAAATCGGTGAGCTCTCAGTCCAACCCCGATTCTGATGCTGACACGAATGACTCCCCTCAGTCCTCTATACTTAGTGTCAAGCAAAAATCACGTATTGAATGCAACAAATTGCTGGCCAAGTCCAAGAGGAATCTGAAAATCTGTGCCGATAGGGTCTCTAATTGGAAAGGTCATGTGAAACTGGAGGATTTGTTGGTGGAGGAGACCTGGTTGGAAGCTCTTTCAGGAGAATTCCAGAAACCTTATGCCAAGAATCTCTGCCAATTTGTGGGAAGAGAGATATACAATGGCGCGGAGGCTATCTATCCACCTTCCCATATGATTTTCAACGCTCTGAATTCTACCCCTTTTGATAAAGTTAAGGCAGTGATCCTTGGGCAGGACCCTTATCATGGACCTGGACAAGCCATGGGCCTTTCATTCTCTGTGCCTGTAGGAGTAAAGGTTCCTTCAAGTCTGGTAAATATATTTAAGGAACTCAAGCAAGACCTTGGTTGTTCAGTTCCATCTCATGGAAATCTAGAAAAATGGACTTCACAGGGTGTTCTCTTGCTTAATGCTGTTCTCACAGTCAGGAAGCATCAAGCTAATTCTCATGCAAAAAAAGGTTGGGAACAGATTACTGATGCCGTTATCAAAACAATTTCACAAAAGAAGGAAGTAGTTGTGTTTCTCTTGTGGGGGAACTCTGCTCAGGAAAAATCTAGGCTGATTGATACAACGAAGCATCACATTCTGAAAGCTGCACATCCTTCTGGTTTGTCTGCAAACAGAGGGTTCTTTGGCTGCAGGCACTTCTCTAAAACTAACCAACTTCTGGAACAAATGGGGATTTCCCCCATTGATTGGGAGCTATGA 1890 0.4407 MSGSNAVANGLAGAGGGIIAQIITYPLQTVNTRQQTERTLKGKKLGLPRSTNTLLQILQVIKTERWGGLYSGLKPSLLGIAASQGIYYYFYQVFKNKAVAIAAARKVKGHGDGTVGMLGWLVVAAIAGSLNVLFTNPIWVIVTRMQTHTQAERKITEGKKEALRREASECSSADSTLQEKLAELESIKPQPYGTLHAMLHYLCRTQQMTLIYLPIHNCIVGFWKGVIPSLIMVCNPSIQFMIYESSLKQLKEKRAAKNQGNKNVTAFEVFLLGALAKLGATVSTYPLLVVKEELVKAYMALADKNARHLMRQRTEEMASLSSKTLMDLYQPVSKRLKPNVTPIRKSVSSQSNPDSDADTNDSPQSSILSVKQKSRIECNKLLAKSKRNLKICADRVSNWKGHVKLEDLLVEETWLEALSGEFQKPYAKNLCQFVGREIYNGAEAIYPPSHMIFNALNSTPFDKVKAVILGQDPYHGPGQAMGLSFSVPVGVKVPSSLVNIFKELKQDLGCSVPSHGNLEKWTSQGVLLLNAVLTVRKHQANSHAKKGWEQITDAVIKTISQKKEVVVFLLWGNSAQEKSRLIDTTKHHILKAAHPSGLSANRGFFGCRHFSKTNQLLEQMGISPIDWEL 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1736 629 SUPERFAMILY Mitochondrial carrier 5 299 IPR023395 -
Lele52g1736 629 SMART UDG_2 457 617 IPR005122 -
Lele52g1736 629 ProSitePatterns Uracil-DNA glycosylase signature. 465 474 IPR018085 GO:0006281|GO:0016799
Lele52g1736 629 Gene3D Mitochondrial carrier domain 2 169 IPR023395 -
Lele52g1736 629 MobiDBLite consensus disorder prediction 342 368 - -
Lele52g1736 629 PANTHER URACIL-DNA GLYCOSYLASE 335 629 IPR002043 GO:0004844|GO:0006281|GO:0006284
Lele52g1736 629 CDD UDG-F1-like 426 627 IPR002043 GO:0004844|GO:0006281|GO:0006284
Lele52g1736 629 FunFam Uracil-DNA glycosylase 404 629 - -
Lele52g1736 629 Hamap Uracil-DNA glycosylase [ung]. 411 628 IPR002043 GO:0004844|GO:0006281|GO:0006284
Lele52g1736 629 Gene3D Mitochondrial carrier domain 188 322 IPR023395 -
Lele52g1736 629 SUPERFAMILY Uracil-DNA glycosylase-like 409 628 IPR036895 -
Lele52g1736 629 SMART UDG_2_a 457 617 - -
Lele52g1736 629 Gene3D - 392 629 IPR036895 -
Lele52g1736 629 ProSiteProfiles Solute carrier (Solcar) repeat profile. 4 97 IPR018108 -
Lele52g1736 629 Pfam Mitochondrial carrier protein 5 96 IPR018108 -
Lele52g1736 629 Pfam Mitochondrial carrier protein 116 252 IPR018108 -
Lele52g1736 629 TIGRFAM ung: uracil-DNA glycosylase 412 621 IPR002043 GO:0004844|GO:0006281|GO:0006284
Lele52g1736 629 MobiDBLite consensus disorder prediction 340 368 - -
Lele52g1736 629 Pfam Uracil DNA glycosylase superfamily 462 616 IPR005122 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1736 Lele-ChrLele52 20848193 20856862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1736 26 294 Chloroplast and Mitochondria Gene Families AT1G25380 23.741 9.33e-12 65.1