Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1714 ATGGCATCGGCCTTTATCAAGCTGGATGATTCCCCCATGTTTCAGAAGCAGATATGTTCTCTTGAAGAAACGACTGATGAGTTAGCAGATCGCTGCCAGAAACTATACAAAGGGTGCAAGAAATTTATGGCAGCTTTAGGAGAAGCTCATAATGGAGACATTGTCTTTGCTGATGCTTTAGAAGTATTTGGTGGTGGACAGGATGATCCTGTTAGTGTATCGATTGGAGGACCTGTCATATCTAAATTTATTAGTGCACTTCGCGAGCTTGCATCTTTTAAAGAGCTTCTCCGGTCACAGGTGGAGCATGTGTTGATCGATCGGTTGGTGCAGTTTATGAATGATGATTTAGGAGATGCAAAGGATTCTCGCACTCGTTTTGATAAAGCTGTACATTCATATGATCAGGCACGAGAAAAGTTTGTGTCTTTGAAGAAGAATACACGGGAAGACATTGTTGCTGGATTAGAAGAGGGTCTTCAAAATTCCAAGTCAGCATTCGAGAAAAGTCGATTTAATCTAGTAAACTCACTCATGAACATTGAAGTGAAAAAGAAGTATGAATTCTTGGAGTCCTTTAGTGCAATAATGGATGCTCATCTTAGATACTTCAAGCTGGGTTATGACTTACTGAGCCAAATGGAACCCTATATTCACCAGGTATTAACATATGCACAACAATCTAAAGAGCTGGCTAATGTTGAACAAGATAAGCTTGCAAAACGAATTCAGGAATATAGAACACAAGCTGAGCTGGACAACTTACGAGCTTCTAGAAATGCTGATACTTTATCTGGTGCTGACGGCAGCCGCATTGTTTGTTTGAACTCATATAAGAGCTCTGAAGTAGGGATCCAGTCTGTGGCCCAAGGGGAGTGTCAAACAGTTAAGCAAGGTTATCTGCTAAAACGATCGTCAAGATTGCGAGGAGATTGGAAGCGGAGGTTCTTTGTGCTCGACAACCAAGGGCGTTTATATTACTATAGAGCAAAGGGAGCCAAGGCTATGGGCTCTCAATCATATCATTTTACTAGATCAACTGAACAAAACAGTGGCATGTTTGGTAGATTCCGCTCTAGGCACAACAGGGCAGCATCACTTAATGAGGAAATTCTGAGTTGCCATGGTGTTGATCTGTGCACATCAACCATAAAGATGGATGCAGACGATTCAGATCTACGACTTTGCTTTCGCATAATTTCCCCATCCAAAACATACACACTGCAGGCTGAAAATGAAGCTGATAGGATGGACTGGGTAAATAAAATTACTGGAGCTATTGCATCACTTTTCAACTCTCAGTTTCTTCAACAGCCTCATCGGGTTGGATTGCATCAAGAAAATGATAAATCAGCCATTGGTGCTTCATGCAATAGTCAATCGCAGCATAGCCATGGATCTTTGACTGAAGACGTATATTCCAATGAAGTGGAGAGTGTCTCTAAGATTTTATGGGGAATTCCTGGAAATAATAGGTGTGCCGAGTGTAGTGCAACTGAACCAGACTGGGCATCTCTTAACCTTGGGATATTGCTGTGTATCGAATGCTCTGGCGTTCATCGAAATCTTGGAGTTCACATATCAAAGGTGAGATCTATAACATTAGACGTCAAGGTCTGGGAACCTACTGTTTTGGACTTATTCCGGAACCTGGGTAATGCGTATTGTAATTCTATATGGGAGGGATTGCTACATGACAAAGAAAGGAAAAATGAGTCAAATGCACCAATTAAACCATGCCCCACAGATGCCTTTCAAGAGAAGGAAAAGTACATCCATGTGAAGTACGTGGAGAAGTTACTAATTAATAAAGAGACTGTACCCGGGAACCCTTCTCCTGCCTTAAGAATCTGGCAAGCAGTTCAGGCCTTGAACATACAAGAAGTGTATCGCCTCATTGTCACTTCAGATGCAATTCTGGTAAACACCAAATATGATGATGTGGTTCACCAGGCTGAGGCAGAAATTTTGGATTTAAGATGTAGCACAACTGAAAGCCAGCAAGATCCTGATAATCCTGTGAGATGTCTCCAAGGTTGTTCGCTGTTGCATCTGGCATGTCATTCTGACAGTGAACTAATGGTTGAGTTGTTGCTTCAATTTGGTGCGGATGTAAATGTGCGTGACTCCCATGGAAAGACTCCCTTGCACTATTGCATTTCTAGAGGAAAAAATCCTTTGGCAAAGCTTCTACTTCGAAGGGGTGCAAGACCTTCCCTTAAAGATGGCGATGGATTCACTGCACTTGAAAGAGCAATGGAGATGGGAGCAATAACTGATGAAGAGCTATTTATTTTGCTCGCTGAATCCGTTTAA 2316 0.4197 MASAFIKLDDSPMFQKQICSLEETTDELADRCQKLYKGCKKFMAALGEAHNGDIVFADALEVFGGGQDDPVSVSIGGPVISKFISALRELASFKELLRSQVEHVLIDRLVQFMNDDLGDAKDSRTRFDKAVHSYDQAREKFVSLKKNTREDIVAGLEEGLQNSKSAFEKSRFNLVNSLMNIEVKKKYEFLESFSAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKELANVEQDKLAKRIQEYRTQAELDNLRASRNADTLSGADGSRIVCLNSYKSSEVGIQSVAQGECQTVKQGYLLKRSSRLRGDWKRRFFVLDNQGRLYYYRAKGAKAMGSQSYHFTRSTEQNSGMFGRFRSRHNRAASLNEEILSCHGVDLCTSTIKMDADDSDLRLCFRIISPSKTYTLQAENEADRMDWVNKITGAIASLFNSQFLQQPHRVGLHQENDKSAIGASCNSQSQHSHGSLTEDVYSNEVESVSKILWGIPGNNRCAECSATEPDWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVKVWEPTVLDLFRNLGNAYCNSIWEGLLHDKERKNESNAPIKPCPTDAFQEKEKYIHVKYVEKLLINKETVPGNPSPALRIWQAVQALNIQEVYRLIVTSDAILVNTKYDDVVHQAEAEILDLRCSTTESQQDPDNPVRCLQGCSLLHLACHSDSELMVELLLQFGADVNVRDSHGKTPLHYCISRGKNPLAKLLLRRGARPSLKDGDGFTALERAMEMGAITDEELFILLAESV 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1714 771 ProSiteProfiles Ankyrin repeat region circular profile. 678 709 - -
Lele52g1714 771 SUPERFAMILY PH domain-like 291 440 - -
Lele52g1714 771 CDD ArfGap 482 596 - -
Lele52g1714 771 ProSiteProfiles ARF GTPase-activating proteins domain profile. 478 609 IPR001164 GO:0005096
Lele52g1714 771 Pfam BAR domain of APPL family 8 230 - -
Lele52g1714 771 Gene3D Arfaptin homology (AH) domain/BAR domain 7 252 IPR027267 -
Lele52g1714 771 PANTHER CENTAURIN/ARF 4 769 IPR045258 GO:0005096
Lele52g1714 771 ProSiteProfiles Ankyrin repeat region circular profile. 711 742 - -
Lele52g1714 771 ProSiteProfiles Ankyrin repeat profile. 711 743 IPR002110 GO:0005515
Lele52g1714 771 Coils Coil 229 249 - -
Lele52g1714 771 Gene3D Arf GTPase activating protein 458 607 IPR038508 -
Lele52g1714 771 Gene3D - 619 767 IPR036770 -
Lele52g1714 771 Gene3D - 286 442 IPR011993 -
Lele52g1714 771 Pfam Putative GTPase activating protein for Arf 481 604 IPR001164 GO:0005096
Lele52g1714 771 SUPERFAMILY Ankyrin repeat 671 763 IPR036770 -
Lele52g1714 771 PRINTS HIV Rev interacting protein signature 509 526 IPR001164 GO:0005096
Lele52g1714 771 PRINTS HIV Rev interacting protein signature 490 509 IPR001164 GO:0005096
Lele52g1714 771 PRINTS HIV Rev interacting protein signature 532 553 IPR001164 GO:0005096
Lele52g1714 771 CDD BAR_SFC_plant 16 217 IPR035670 -
Lele52g1714 771 SUPERFAMILY BAR/IMD domain-like 8 317 IPR027267 -
Lele52g1714 771 Pfam PH domain 296 427 IPR001849 -
Lele52g1714 771 SUPERFAMILY ArfGap/RecO-like zinc finger 478 602 IPR037278 -
Lele52g1714 771 ProSiteProfiles Ankyrin repeat profile. 678 710 IPR002110 GO:0005515
Lele52g1714 771 SMART arf_gap_3 478 609 IPR001164 GO:0005096
Lele52g1714 771 SMART 5bar 13 220 IPR004148 GO:0005515|GO:0005737
Lele52g1714 771 SMART PH_update 295 430 IPR001849 -
Lele52g1714 771 SMART ANK_2a 678 707 IPR002110 GO:0005515
Lele52g1714 771 SMART ANK_2a 711 740 IPR002110 GO:0005515
Lele52g1714 771 ProSiteProfiles PH domain profile. 294 428 IPR001849 -
Lele52g1714 771 Pfam Ankyrin repeats (3 copies) 683 742 IPR002110 GO:0005515
Lele52g1714 771 CDD PH_ACAP 297 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1714 Lele-ChrLele52 20647508 20658564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1714 488 596 C2H2 Transcription Factor Family AT4G05330 41.818 7.66e-20 89.7