Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1709 ATGGAGGCATCATCTTCGTCGGTGGCGTCGCTGTTCGGAATTAGAGGAGATCAGAATCAGATGAATCCGCAGCAGCATTCATCAACTCCAACTTCATCAACAACCGCAGCTGCACCAACCCAGAAGAAGAAGAGAAACCAGCCAGGAACACCAAATCCAGATGCAGAGGTGATAGCTCTATCTCCAAAGACATTAATGGCGACAAACAGGTTCATATGTGAGGTATGCAACAAAGGGTTCCAAAGAGAGCAGAACTTGCAACTTCACAGAAGAGGACACAACCTGCCTTGGAAACTAAAGCAGAAGACAAATAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCCGAGCCCACATGCGTCCACCATGACCCTTCAAGAGCCCTCGGTGACCTCACCGGCATCAAGAAACACTACTCTCGAAAGCACGGCGAGAAGAAGTGGAAGTGCGAGAAGTGCTCCAAGAAATACGCCGTTCAGTCTGATTGGAAAGCACATTCTAAGACTTGTGGCACCAGAGAATACAGGTGCGACTGTGGAACTCTCTTCTCCAGGCGAGACAGTTTTATCACCCACAGGGCGTTTTGTGATGCACTGGCCCAAGAAAGTGCGAGACAGCCTTCCAACTTGATTAATGGGAGCCAGCTCTATGGAAGTAACAATATGGCTTTACGCTTATCTCAGGTGGCCTCCCACATCTCCGCCGGCCATGACCCCAACCCCAACAATCAAACCGGCGGCGACATTTTGCGAGCAGCTGCTGCTTCTCGGGCTCCTGGCCATTTCGACCACCTTCTCCCACCATCCTTAATCAGACCGCCGCCGCCGCCGCAGGTGGCGCCCAATGTTGCTTCTCCTCCGCCCTTCTTCATGCCGGAGAACTATCCCCACCATGATCATCATCAGCAAAACAAGCAATTCCATGGACTCATGCAATTCTCTGATCTTCATCACAACAATAGTAACAATTCTCCAACATCTGGTCCTAATAACAGCACCAATCTCTTCAACCTCCCTGCATTCCTCTCCAACACCACCAACAATAACAGTTCTTTATCCGACCACTTGGGAAACAATGGCAGCGCTGCCGCCGTGGACGGCCCCAACAACTTCTTCTCCGACCAAATCACAAGCTCCAGTGCTCCTTCTCTTTTCAGCACATCTCTTCAGAACAACAGTAACAGCAGTGGCATCCCTCACATGTCTGCAACAGCGCTGCTTCAAAAGGCTGCTCAAATCGGTGCGAGTACAAGCAACAACAGCACCACCACCTCGCTTCTCAGAAGCTTCGAAAGCTCCTCCTCCACCACCACCGGGTCCAAGTCTGATCATCACCACCACAACAGGCCTCCGCCACAGCAGCTGGTCGGAGCAAACTATGGCGCCATTTTCGGAGGGTCCTCGTCCACGAACAACGATTATCAGAACAGCAACCTTCAAGACCTGATGAACACATTCACTACCGTTGGTGGGTATGAAAGATACAATCATCATCATCAACAGAACAACTCGAACACAAGAGACCTAAAATTTCCTGCAGGATCTGACAGGCTCACTCGAGATTTTCTTGGGGTTGGGCAGATTGTGAGGAGCATGAGCGGAGGGATTTCGCCCAGAGATCATCATCAGCAGCAGCAGCAACAAGGTTTCATGAACTTGGGTTCTTTGGAGAATCACAGAAACAATAACAATAATAATAATGGTGCGCCGTCAGGCCAATCTTTTGGAGGAGGAGGAGGAGGGAATTTTCAGTGA 1752 0.5006 MEASSSSVASLFGIRGDQNQMNPQQHSSTPTSSTTAAAPTQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQPSNLINGSQLYGSNNMALRLSQVASHISAGHDPNPNNQTGGDILRAAAASRAPGHFDHLLPPSLIRPPPPPQVAPNVASPPPFFMPENYPHHDHHQQNKQFHGLMQFSDLHHNNSNNSPTSGPNNSTNLFNLPAFLSNTTNNNSSLSDHLGNNGSAAAVDGPNNFFSDQITSSSAPSLFSTSLQNNSNSSGIPHMSATALLQKAAQIGASTSNNSTTTSLLRSFESSSSTTTGSKSDHHHHNRPPPQQLVGANYGAIFGGSSSTNNDYQNSNLQDLMNTFTTVGGYERYNHHHQQNNSNTRDLKFPAGSDRLTRDFLGVGQIVRSMSGGISPRDHHQQQQQQGFMNLGSLENHRNNNNNNNGAPSGQSFGGGGGGNFQ 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1709 583 MobiDBLite consensus disorder prediction 314 335 - -
Lele52g1709 583 MobiDBLite consensus disorder prediction 553 583 - -
Lele52g1709 583 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Lele52g1709 583 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Lele52g1709 583 Gene3D Classic Zinc Finger 50 119 - -
Lele52g1709 583 MobiDBLite consensus disorder prediction 415 461 - -
Lele52g1709 583 FunFam protein indeterminate-domain 12-like 50 118 - -
Lele52g1709 583 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Lele52g1709 583 MobiDBLite consensus disorder prediction 1 56 - -
Lele52g1709 583 SMART c2h2final6 147 167 IPR013087 -
Lele52g1709 583 SMART c2h2final6 112 142 IPR013087 -
Lele52g1709 583 SMART c2h2final6 71 93 IPR013087 -
Lele52g1709 583 MobiDBLite consensus disorder prediction 415 438 - -
Lele52g1709 583 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Lele52g1709 583 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Lele52g1709 583 MobiDBLite consensus disorder prediction 1 48 - -
Lele52g1709 583 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 22 543 IPR031140 -
Lele52g1709 583 Gene3D Classic Zinc Finger 125 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1709 Lele-ChrLele52 20621860 20625121 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1709 41 533 IDZ Gene Family AT2G02070 47.898 5.63e-133 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele52g1709 zf-C2H2_jaz 3.6e-05 CL0361