Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1690 ATGGACCCCGACACGTGTCGCTGGGTACAAGAGTTTCTCCTCATGAGTTCCGCTCCAGATTTAATCGTCAAGAATGTTTGGAATGTTTTGCCTCCCTCTGGTATCGATTCGCGGCTGCAGAAAATATTGCTTCTCAGGTCTATTCAATCGGAGGTGTCTGCGGCCATATTTACTGAAAGCTCATTGGAATGTCTAGAGCTCATTGAAGAAATCGACAGGCTTGATGGCGTTGCAATCACACAAGCGATGAAGGAGGCATATTGTGCTGTTGCCGTGGAGTGCAGTCTCAGGTACCTTGAGAACTGCCCAGAGAAGAACACCCGCGGCTTGTTTGACGATGCTGTAAATAGGATTTGGCGGGGCCGAGTTCGGCAAATGATGAAGGCGATGACACTAGGGGAGAAGAGTTACTTATTTACGGCTGAGTTGATAGGGTGGAAGGACAACATAGAGTCTACACGTTGGGATGCAGAGGTGTGCGTGAGGTTAATGAACATGAATACCAGACGAGATGCACTCGATAAGGTTAGGGTTTATCTAGAAGAAACTAGGGCATCCATGGGCCCTTCTTTTCTTGAGTTAGCAGCTATATCGTCTCAAGACAAGGGTTTGGGAAGTTCAAGTGGCGATAAGATGGGTGACGCGGAGCCTGCTGCTGGTACACCCAATGAAGGTTGTGACAAGGGTGTTTCTGAATCTGTCTTCGTCTCTGATCAGATGAATATGTGTGAAGGAAGGTTACATTGTTCAACTAACACGACTGAGGAAGGTTTAGTTGTGCCTGATGAAAGTGCATTGGATAATGCTGCAATCTGCATGGAGAAGGCCCCAGTGGTAGGTGGGAATCAAGATCGTGAGCATTCGGTAAAGAGAGTTGTGTCTTCTGATGGCGGAAATGAGGCATTGGGTGGAACTGACTTGCGTCAAAGGATAAGAAGAGGAAAAGCTGCTCTGTGCATTTTGATATATTTTTCTGTGTCTTACGCAGAAATTCGAAAGGGAAAGCGGCCACTTGAACACAATCATGCTGCGCCCTCTAAACGTAGAGGAGTTAAAATTATTGATGCCGAGGAAGTAGGGCCAGAAACAGTTTGCAGCAAAGATCAAAATGCGTCTAATATTCAAGTTGAAAAACTTAGAAAATCTCTCGTGTCAAGTTCTTTGGAGTTGCGAGCATTGGTGAAGGATCCTCTTCCTGATGCATTAAATAGATCTGACACTGTAAGATCTGAATTAGCAGCAAAGGATGTGAATCATGAGCCTCCTTTGGAAAACCAGAGTACAGATGTAAATGTACCAGAGCAAAATACTCCTTTGGAAAATCAGAGTACAGATGTAAATGTACCAGAGCAAAACACTTGCAGGAGTGTGGTGCTTTATAAACCTATCGCTGATAATTCGAAGCCCATTGATGATAATTCAAAGAAACGTTCTTCTGCTAGTTGTAGTAATGTTCGACGTCCGAGCAGCTGGATGGAACGAAATAGCACTGCCCATACTTATGAGTGGGATGATGCATTTGATGTCTTGCCTGGGGGAGGCCTTAAGAGAAGGAGGAAAAGATGGAGTCTTGAAGAAGAGGATGCACTAAGGGCTGGGGTAAAGAAGTTTGGCAAAGGGAACTGGAAGCCAATTCTAAGATTTTACAGTGAGCTATTTGCAAAGGCAGGAAGGACAGAGGTGGATTTGAAGGATAAATGGAGAAATTTGACACGATGGTTTACATTAAGGCTTATAGATTTATTGCTTTTTGGGTATGATATAAAAAAGTGGATTACAAATCGTATTCCAGCGCCTATTCCTCGCCCGTTATCTACTAGGCCTAAATCTCGTAGTTCTACTGGCACCGTTAGAAGTCCGATTCATTCATATCTTTGTAGTGGAGCCTTTGTTTGTTTTGCATTCAAGCTTCTTGGGTTAAGACTAGATTCAGTAAATGAGATATGTTTTGGTAGAATGGTTCTGATTGCTTGA 1974 0.4392 MDPDTCRWVQEFLLMSSAPDLIVKNVWNVLPPSGIDSRLQKILLLRSIQSEVSAAIFTESSLECLELIEEIDRLDGVAITQAMKEAYCAVAVECSLRYLENCPEKNTRGLFDDAVNRIWRGRVRQMMKAMTLGEKSYLFTAELIGWKDNIESTRWDAEVCVRLMNMNTRRDALDKVRVYLEETRASMGPSFLELAAISSQDKGLGSSSGDKMGDAEPAAGTPNEGCDKGVSESVFVSDQMNMCEGRLHCSTNTTEEGLVVPDESALDNAAICMEKAPVVGGNQDREHSVKRVVSSDGGNEALGGTDLRQRIRRGKAALCILIYFSVSYAEIRKGKRPLEHNHAAPSKRRGVKIIDAEEVGPETVCSKDQNASNIQVEKLRKSLVSSSLELRALVKDPLPDALNRSDTVRSELAAKDVNHEPPLENQSTDVNVPEQNTPLENQSTDVNVPEQNTCRSVVLYKPIADNSKPIDDNSKKRSSASCSNVRRPSSWMERNSTAHTYEWDDAFDVLPGGGLKRRRKRWSLEEEDALRAGVKKFGKGNWKPILRFYSELFAKAGRTEVDLKDKWRNLTRWFTLRLIDLLLFGYDIKKWITNRIPAPIPRPLSTRPKSRSSTGTVRSPIHSYLCSGAFVCFAFKLLGLRLDSVNEICFGRMVLIA 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1690 657 SMART sant 518 573 IPR001005 -
Lele52g1690 657 MobiDBLite consensus disorder prediction 203 226 - -
Lele52g1690 657 SUPERFAMILY Homeodomain-like 517 573 IPR009057 -
Lele52g1690 657 MobiDBLite consensus disorder prediction 421 446 - -
Lele52g1690 657 MobiDBLite consensus disorder prediction 476 491 - -
Lele52g1690 657 CDD SANT_TRF 520 572 - -
Lele52g1690 657 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 516 575 IPR017930 -
Lele52g1690 657 Pfam Myb-like DNA-binding domain 519 570 IPR001005 -
Lele52g1690 657 PANTHER MYB TRANSCRIPTION FACTOR 1 572 - -
Lele52g1690 657 MobiDBLite consensus disorder prediction 465 491 - -
Lele52g1690 657 ProSiteProfiles Myb-like domain profile. 514 571 IPR001005 -
Lele52g1690 657 Gene3D - 522 603 - -
Lele52g1690 657 MobiDBLite consensus disorder prediction 414 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1690 Lele-ChrLele52 20495053 20500759 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1690 520 570 Single Myb Histone (SMH) Gene Family AT1G15720 58.824 8.52e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele52g1690 Myb_DNA-binding 3.7e-09 CL0123