Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1689 ATGAAGGGCCACGAGAGGCCATTGACATTTCTCAAGTACAACATAGATGGAGATCTTCTTTTCTCTTGTGCTAAGGATCACAACCCCACCGTCTGGTTCGCGGACAATGGTGAACGCTTGGGCACTTATCGTGGACACAACGGTGCTGTTTGGTGCTGTGATGTCTCAAGAGATTCAATGCGGCTTATAACGGGCAGTGCGGATCAGACGGCAAAGCTATGGAATGTTCAAACTGGGCAGCAGTTGTTCACGTTCAATTTTGATTCTCCTGCTAGGTCTGTGGATTTCGCTGTGGGCGACAAACTTGCTGTTATGACAACTGATCCTTTCATGGAATTGCCTTCTGCAATTCATGTCAAACGCATTGCTAGAGACACCAGTGACCAGAATGGCGAATCTATACTTGTCATCAAAGGCCCTCAGGGAAGAATAAATAGAGCCATTTGGGGGCCGCTAAACAAAACCATTATTAGTGCTGGAGAAGATTCAGTGATCCGTATATGGGATTCTGAGACAGGAAAGCTACTTAAGGAGGTAGAAAAGGAATCTGGCCACAAAAAGACAATCACATCTCTTGCAAAATCCGCGGATGGTTCCCATTTCCTGACTGGCTCTCTTGATAAATCGGCTAAGCTTTGGGATGCCAGATCATTGTCTCTTATCAAGACATATGTAACGGAACGCCCAGTCAATGCAGTGGCCATGTCACCTCTTCTTGACCATGTAGTGCTTGGAGGTGGTCAAGATGCATCAGCTGTTACGACTACTGATCATCGTGCTGGAAAATTCGAGGCCAAGTTTTTTGATAAAATTCTTCAAGAAGAAATTGGGGGTGTGAAGGGACATTTTGGACCAATTAATGCACTTGCCTTTAATCCTGATGGCAAGAGCTTTTCAAGTGGAGGTGAAGATGGTTATGTCAGGTTGCATCACTTTGATCCAGATTACTTCAATATTAAGGTTTAG 966 0.4482 MKGHERPLTFLKYNIDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMRLITGSADQTAKLWNVQTGQQLFTFNFDSPARSVDFAVGDKLAVMTTDPFMELPSAIHVKRIARDTSDQNGESILVIKGPQGRINRAIWGPLNKTIISAGEDSVIRIWDSETGKLLKEVEKESGHKKTITSLAKSADGSHFLTGSLDKSAKLWDARSLSLIKTYVTERPVNAVAMSPLLDHVVLGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIKV 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1689 321 Pfam WD domain, G-beta repeat 137 169 IPR001680 GO:0005515
Lele52g1689 321 Pfam WD domain, G-beta repeat 278 309 IPR001680 GO:0005515
Lele52g1689 321 Pfam WD domain, G-beta repeat 38 75 IPR001680 GO:0005515
Lele52g1689 321 Pfam WD domain, G-beta repeat 183 214 IPR001680 GO:0005515
Lele52g1689 321 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 182 217 - -
Lele52g1689 321 SMART WD40_4 172 214 IPR001680 GO:0005515
Lele52g1689 321 SMART WD40_4 272 311 IPR001680 GO:0005515
Lele52g1689 321 SMART WD40_4 217 256 IPR001680 GO:0005515
Lele52g1689 321 SMART WD40_4 36 75 IPR001680 GO:0005515
Lele52g1689 321 SMART WD40_4 130 169 IPR001680 GO:0005515
Lele52g1689 321 CDD WD40 2 309 - -
Lele52g1689 321 ProSiteProfiles Trp-Asp (WD) repeats profile. 137 178 IPR001680 GO:0005515
Lele52g1689 321 ProSiteProfiles Trp-Asp (WD) repeats profile. 279 309 IPR001680 GO:0005515
Lele52g1689 321 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 279 309 - -
Lele52g1689 321 ProSiteProfiles Trp-Asp (WD) repeats profile. 1 42 IPR001680 GO:0005515
Lele52g1689 321 PRINTS G protein beta WD-40 repeat signature 156 170 IPR020472 -
Lele52g1689 321 PRINTS G protein beta WD-40 repeat signature 62 76 IPR020472 -
Lele52g1689 321 PRINTS G protein beta WD-40 repeat signature 201 215 IPR020472 -
Lele52g1689 321 Hamap Eukaryotic translation initiation factor 3 subunit I [EIF3I]. 1 321 IPR027525 GO:0003743|GO:0005737|GO:0005852
Lele52g1689 321 ProSiteProfiles Trp-Asp (WD) repeats profile. 182 223 IPR001680 GO:0005515
Lele52g1689 321 Gene3D - 1 321 IPR015943 GO:0005515
Lele52g1689 321 ProSitePatterns Trp-Asp (WD) repeats signature. 156 170 IPR019775 -
Lele52g1689 321 SUPERFAMILY WD40 repeat-like 2 309 IPR036322 GO:0005515
Lele52g1689 321 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 1 320 - -
Lele52g1689 321 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 43 80 - -
Lele52g1689 321 ProSitePatterns Trp-Asp (WD) repeats signature. 62 76 IPR019775 -
Lele52g1689 321 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 137 174 - -
Lele52g1689 321 ProSiteProfiles Trp-Asp (WD) repeats profile. 43 84 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1689 Lele-ChrLele52 20491150 20494093 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1689 1 321 Eukaryotic Initiation Factors Gene Family AT2G46290 78.947 0.0 541