LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele52g1687	ATGTCTGGTGCTTCCTCGTCTTCACCGTTCTTCGGAATCAGAGAAGAAAACCCAATTCATCAGGTGACACAACATCAACAATCCTCCACAGCTGCTTCCTCGACTGCTCCAAACACTGTAGTTCCTCAAAAGAAACGAAGGAATCAACCTGGAACCCCAAGCAAAGAACGCACAGATCCAGATGCGGAGGTGATAGCTCTATCTCCAAAGACATTAATGGCGACAAACAGGTTCATATGTGAGGTATGCAACAAAGGGTTCCAAAGAGAGCAGAACTTGCAACTTCACAGAAGAGGACACAACCTTCCATGGAAGCTCAAGCAGAAGACAAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCCGAGCCCACATGCGTCCACCATGACCCTTCAAGAGCCCTCGGTGACCTCACCGGCATCAAGAAACACTACTCTCGAAAGCACGGCGAGAAGAAGTGGAAGTGCGAGAAGTGCTCCAAGAAATACGCAGTTCAGTCTGATTGGAAAGCACATTCTAAGACTTGTGGCACCAGAGAATACAGATGCGATTGTGGAACTCTCTTCTCCAGACGTGACAGTTTCATCACTCACAGAGCCTTCTGTGATGCCCTAGCTCAGGAGAGTGCGAGGAACCCTACAAGCTTAAACCCTATGGCCGCTCATCTTTATGGCTCAAACCACCATATGAGCTTAGGCTTATCTCATCATCAGCAACTTGGTTCCTCAATGTCCCACCATCATCTTCATCCTCAAAACCTCCACGCTTCTTCTGCAACAGCAAACCCTAATTCCAGTCTCCAGCGTCTAGGCAATGCCAATAATAATGCAGCAAAATTTGAGGCTTCTTCCTTAATCTCACCATCTTCATCATCAAACCCGTCAATGCCTAATCATTCCTCGGCTTTCTTCATGACAGATCCTATACCTAATCAAGGATTTCATCAGCAGCAAGCAGCGGCATTTTCGGCTTCAGGCAAGTCATCGTCGTCTTTACATGGTCTCATGCGGCTTCCTGATCTTCAAGGAAACCCGAGTAATAATCTAGGGTTCTTCGCTAATAACAGTATCATCACTGATCAGTTCAGTAACGTCCCTATTGGTGATCATCAGTCTACAGGTTTGCTCTTCAGTAACTCAATGCAACACGCCGACGAGGTTTCTCCGGCGGCCGCGCATATGTCTGCTACTGCATTGCTTCAGAAAGCTGCTCAAATGGGCTCGACCACTACCACGTCGAATAATAATAGTTCTTCCTCGTTACTCAGAGGAATGGGTGGCGGTTCATCAACAAACAATAACAATGGGGCTAAATCCGATAATCTTGTTGCTTTTGCGAGTGACAGTACAGAAATCGACCACCACCACCATCATCTTCGAGGGTTGATGAACTCTCTTGTTAATGAGAATGCTTCGATATTTGGAAATGTAGCAGGGAACGATCATCATCATCATCAGGCTAATAGTCTGCAACAGAATCTGGGTACTGTGAGCTTCGGAGGTTCTGATAAGTTAACGTTAGACTTTTTAGGTGTCGGAGGAATGGTGAGGAACATGAACGGCGGATTTTCACAGAGAGAACAACAACATGGAAGCATGAACATGAGTTCTTTGGAACCTGAACAACAGGCAAGCCAAACTTTCAGAAGCACGACGATGCAATGA	1665	0.4619	MSGASSSSPFFGIREENPIHQVTQHQQSSTAASSTAPNTVVPQKKRRNQPGTPSKERTDPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARNPTSLNPMAAHLYGSNHHMSLGLSHHQQLGSSMSHHHLHPQNLHASSATANPNSSLQRLGNANNNAAKFEASSLISPSSSSNPSMPNHSSAFFMTDPIPNQGFHQQQAAAFSASGKSSSSLHGLMRLPDLQGNPSNNLGFFANNSIITDQFSNVPIGDHQSTGLLFSNSMQHADEVSPAAAHMSATALLQKAAQMGSTTTTSNNNSSSSLLRGMGGGSSTNNNNGAKSDNLVAFASDSTEIDHHHHHLRGLMNSLVNENASIFGNVAGNDHHHHQANSLQQNLGTVSFGGSDKLTLDFLGVGGMVRNMNGGFSQREQQHGSMNMSSLEPEQQASQTFRSTTMQ	554

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele52g1687	554	MobiDBLite	consensus disorder prediction	284	304	-	-
	Lele52g1687	554	PANTHER	SERINE/THREONINE-PROTEIN KINASE RIO	23	530	IPR031140	-
	Lele52g1687	554	MobiDBLite	consensus disorder prediction	521	554	-	-
	Lele52g1687	554	SUPERFAMILY	beta-beta-alpha zinc fingers	77	174	IPR036236	-
	Lele52g1687	554	SMART	c2h2final6	119	149	IPR013087	-
	Lele52g1687	554	SMART	c2h2final6	154	174	IPR013087	-
	Lele52g1687	554	SMART	c2h2final6	78	100	IPR013087	-
	Lele52g1687	554	Gene3D	Classic Zinc Finger	54	126	-	-
	Lele52g1687	554	MobiDBLite	consensus disorder prediction	49	63	-	-
	Lele52g1687	554	Pfam	Zinc-finger double-stranded RNA-binding	78	100	IPR022755	-
	Lele52g1687	554	MobiDBLite	consensus disorder prediction	19	48	-	-
	Lele52g1687	554	FunFam	protein indeterminate-domain 5, chloroplastic-like	132	211	-	-
	Lele52g1687	554	MobiDBLite	consensus disorder prediction	238	271	-	-
	Lele52g1687	554	FunFam	protein indeterminate-domain 12-like	57	125	-	-
	Lele52g1687	554	Gene3D	Classic Zinc Finger	132	212	-	-
	Lele52g1687	554	ProSiteProfiles	Zinc finger C2H2 type domain profile.	78	100	IPR013087	-
	Lele52g1687	554	MobiDBLite	consensus disorder prediction	405	436	-	-
	Lele52g1687	554	ProSitePatterns	Zinc finger C2H2 type domain signature.	80	100	IPR013087	-
	Lele52g1687	554	MobiDBLite	consensus disorder prediction	1	63	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele52g1687	Lele-ChrLele52	20472440	20476366	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele52g1687	73	520	C2H2 Transcription Factor Family	AT2G02080	48.340	1.06e-123	369

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Lele52g1687		zf-C2H2_jaz	3.4e-05	CL0361