Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1671 ATGGCTGCTTCCAAGGCGTTAATGGCTTCCTTAACCCATCTTCGTCCACTAACATGCGCGGCTTCTATATCAACATCTTATCCTACACGACTCGTGCCCCAACCTCCCGACCTCATCAAGTGGGTTCGGAAACAAGGTGGTTTCGTGCATCAGGCGGTGAAGATAGCACAAGATGACTCCAAAGGACTCGGGCTTATGGCTTCTGAAGAAATCCCTAGAGGCACTGACCTCATTTTTCTTCCGCACCACGTACCCTTGAAGTTCGGGTCTCTTGAATCGAACTTTGAAGATGAGCTTCATTCCGTGTTAGTTAATTTAGCCCGCCATATTCCTGAGGAACTATGGGCTATGAAACTGGGTTTGAAGCTTCTGCAAGAAAGAGCAAAAGTGGGATCGTTTTGGTGGCCATACGTCAGCAATCTCCCAGAAACATACAGTGTACCTATCTTCTTTCCAGGGGAGGATATAAAGAACTTGCAGTATGCTCCACTGCTTAACCAGGTAAACAAAAGATGTCGTTTTCTTCTTGATTTTGAGCAAGAGTGCAGGTGTGCCCTTGACAATCTGAAACCAGATAAGCATCCTTTTGATGGACAAGAAGTAGATGTATCTGCACTTGGATGGGCAATGTCAGCAGTCTCATCTAGGGCATTCCGGTTATATGGTGACAAGCATCCAGATGGGACCCACACAGGCATACCAATGATGCTTCCTCTAATTGATATGTGCAACCATAGTTTCAATCCGAATGCCCGAATTGTTCAGGAAAAAGATACTGGTACAATGAAGATGCAAGTAAAGGTGGTGGCTGATACAGAAATAAGACAAGATGATCCTTTATTACTCAATTATGGCTTTTTAAGCAATGATTTTTTTCTTCTTGATTATGGATTTGTGGTACCTTCAAATCCTTATGACTATATTGAGCTCAAATACGATGGTGCATTTTTGGATGCTGCAAGCATGGCGGCTGGGGTTTCTTCTCCCAACTTCTCGGCACCTGCTTCATGGCAGGAACAAGTTTTATGTCAACTAAATCTAGCTGGAGAAGCTCCTGATCTCAAGGTAAGCTTAGGTGGTCGAGAAATAGTAGATGGCCGGCTATTGGCAGCACTGAGAGTACTTCTTGCGAGTGACATGGAGGCTGTGCAGAACTGTGACCTTAACACTCTCAAGTCCCTAGCTGCTGAAGCTCCTCTTGGTATTGCAAATGAAGTGGCAGCCCTGCGAACAACAATTGCTTTGTGTGTCATTGCACTGGGGCACTTCCCCACCAAGACAATGGATGATGAGTCATTATTGAAACAGGGTGCTTCAGGTTCAACTGAGCTGGCCATTCAGTTCAGGATTCAAAAGAAATCTGTGATTATTGATGTGATGAGAGATCTGACAAGGAGGGTGAAGCTTCTCTCATCAAAGGAAAAAGTCACTGCTGAAAGTTGA 1443 0.4477 MAASKALMASLTHLRPLTCAASISTSYPTRLVPQPPDLIKWVRKQGGFVHQAVKIAQDDSKGLGLMASEEIPRGTDLIFLPHHVPLKFGSLESNFEDELHSVLVNLARHIPEELWAMKLGLKLLQERAKVGSFWWPYVSNLPETYSVPIFFPGEDIKNLQYAPLLNQVNKRCRFLLDFEQECRCALDNLKPDKHPFDGQEVDVSALGWAMSAVSSRAFRLYGDKHPDGTHTGIPMMLPLIDMCNHSFNPNARIVQEKDTGTMKMQVKVVADTEIRQDDPLLLNYGFLSNDFFLLDYGFVVPSNPYDYIELKYDGAFLDAASMAAGVSSPNFSAPASWQEQVLCQLNLAGEAPDLKVSLGGREIVDGRLLAALRVLLASDMEAVQNCDLNTLKSLAAEAPLGIANEVAALRTTIALCVIALGHFPTKTMDDESLLKQGASGSTELAIQFRIQKKSVIIDVMRDLTRRVKLLSSKEKVTAES 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1671 480 SUPERFAMILY SET domain 33 303 IPR046341 -
Lele52g1671 480 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 295 475 IPR036464 -
Lele52g1671 480 Gene3D - 326 476 IPR036464 -
Lele52g1671 480 FunFam SET domain containing protein 321 474 - -
Lele52g1671 480 ProSiteProfiles SET domain profile. 51 285 IPR001214 GO:0005515
Lele52g1671 480 Gene3D set domain protein methyltransferase, domain 1 6 298 - -
Lele52g1671 480 SMART set_7 51 291 IPR001214 GO:0005515
Lele52g1671 480 FunFam Histone-lysine N-methyltransferase setd3 3 298 - -
Lele52g1671 480 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 24 442 - -
Lele52g1671 480 Pfam SET domain 62 285 IPR001214 GO:0005515
Lele52g1671 480 CDD SET_LSMT 52 299 - -
Lele52g1671 480 Pfam Rubisco LSMT substrate-binding 333 455 IPR015353 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1671 Lele-ChrLele52 20336705 20340496 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lele52g1671 SET 2e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g1671 52 20336705 20340496 Lele52g1671 52 20336705 20340496 ECH
Lele49g1127 49 7475559 7476540 Lele52g1671 52 20336705 20340496 hybridization
Lele50g1710 50 21928195 21933381 Lele52g1671 52 20336705 20340496 hybridization