Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1664 ATGGTTGCTTTCCGTGCTCTCAGATCTTCAAAGCTCATCTCATGGAAACCGACTGGCAGGCTTCAGCAAACCTTAGCAGGTTGTGTTGAGCGGCGAGGTAATACTTTACACTCTGGAAAGGCTTCAGTAGTCAAACTCTGTCCTGGATTTGTAGGAGAAGGGAGGTATTTCGATTTCCGGTCCAATTCGATAGCTGCGTCGATTGATTTTGCTCACGTGTCACCTCTCTGCACCACATTGTGTAAAGATGGTTTCAGAGTACGAACTGTTGAGCACTTGCTTTCTGCTTTGGAGGCGACTGGTGTTAATAATTGCAGAATTGAGGTAGAAAATTTGGATTCTGAAGGAGATTGTGCTGAGATCCCTATATTTGATGGGTCAGCTACTGAATGGGTAGCAGCAGTGGAAGAAGTTGGTTTAAAGGCGGCAACTGATCACCATGGCAATAGTTGTGAAAAGTTAGCTCCACATCTGAATGAACCAACGTACGTTTTTAGGAATGATTCTTTTGTTGCCGCATTTCCTTCAACAATGGTTCAAATAACCTATGGAATTAACTTTCCACAGGCAAGTGCTATTGGATGCCAGTGGTTTTCGACCCCCTTGGACGATTTACTTTATTCCAAACAGATAGCTTTGTCAAGAACTTTCTGCATTTACGAGGAGATTGAACAAATGCGCAATGCTGGACTGATTAAAGGAGGTAGTCTAGAAAATGCCATTGTTTGCAGTGCCCATAATGGTTGGTTGAATCCCCCTTTGCGTTTCAATGATGAACCATGTCGCCATAAGGTCCTAGATCTTATAGGAGATCTTTCTCTTTTTGCTCAGTTTGGGCATCAAGGAGTTCCAGTGGCACACGTTGTAGCTTACAAGGCTGGCCATGCATTGCATGCTGATCTGGTACGCCGTCTAATAGGAACGATTTGA 930 0.4398 MVAFRALRSSKLISWKPTGRLQQTLAGCVERRGNTLHSGKASVVKLCPGFVGEGRYFDFRSNSIAASIDFAHVSPLCTTLCKDGFRVRTVEHLLSALEATGVNNCRIEVENLDSEGDCAEIPIFDGSATEWVAAVEEVGLKAATDHHGNSCEKLAPHLNEPTYVFRNDSFVAAFPSTMVQITYGINFPQASAIGCQWFSTPLDDLLYSKQIALSRTFCIYEEIEQMRNAGLIKGGSLENAIVCSAHNGWLNPPLRFNDEPCRHKVLDLIGDLSLFAQFGHQGVPVAHVVAYKAGHALHADLVRRLIGTI 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1664 309 Pfam UDP-3-O-acyl N-acetylglycosamine deacetylase 22 306 IPR004463 GO:0008759|GO:0009245
Lele52g1664 309 Gene3D lpxc deacetylase, domain 2 157 308 IPR011334 GO:0008759|GO:0009245
Lele52g1664 309 PANTHER UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED 2 307 IPR004463 GO:0008759|GO:0009245
Lele52g1664 309 SUPERFAMILY Ribosomal protein S5 domain 2-like 21 142 IPR020568 -
Lele52g1664 309 Gene3D lpxc deacetylase, domain 1 20 147 IPR015870 GO:0008759|GO:0009245
Lele52g1664 309 SUPERFAMILY Ribosomal protein S5 domain 2-like 161 306 IPR020568 -
Lele52g1664 309 TIGRFAM lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 22 306 IPR004463 GO:0008759|GO:0009245
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1664 Lele-ChrLele52 20288989 20293150 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1664 2 305 Carbohydrate Esterase AT1G25054 62.623 1.21e-142 403