Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1647 ATGGCAGAAACGTGCGGAAGCAGTAGATCTTGGTTCGACGATATTTACTGGAGCCATTTCAAATTCATGCATTTTGTGCTGCGTCTCCCTCCTGGTTTTGATCAACACCTTGCACTTCCCAAAACGTTTTCAGATAGCTTGAAAAGAAAATTGCCAGATAATGTGACCCTTAAAGGTCCTGGTGGCGCTGAGTTGACTGTCAGATTGTCATTTAGAGATGATATATTGTACTTCACGTATGGTTGGCAACAATTTGCACAAGATCACTTTTTGGAAGAGAATGATCTCCTGATCTTCAAGTACAATGGCGAATCACAGTTTGATGTTCTAATATTTGACCAGAAGAACTTATGTGAGAAGGTGGCTTCTTATTTTGTTCGGGACAGCGGGCAAACAAATAAGATAAACACAGATAACTGTAAGGAAGAACAAAATATTACTTCAAATATCGATGTCAAAGGGGCTTCGCCTGAGAAATCTGCTCGTGGCAAAAGTAAAAGTAAAAAGACTCGTAAAGCTACTGTGGAATCCACCTGTGCCCAGCAAACTAAGCGGAGAGGAAGATCTAAGGGATCTGATGCGCATGCAGGAGAAGTTGAATGGATTCCTGATGCTGAACCTGTATCTGCGAGCAGAAATAAGATGGTTGAAATAGTGGGTGCTTCAAGCAGAAGGGCTATCATAGAGAATGCGAAAAAGAATACCCTCGAATTGGCTGAAGCAGCATGTCCCACTGATGGATTCTATGTAGTCATGCGACCTTCGCATGTATTTGGGAAATTCTATATGACGATCCCTACGAAGTGGATGACAGAGCATTTTCCTCCGCAATCTGAAGATGTGATATTATGTGTGGGAAAGAGCGAATGGCCTGTTAAATACGCCTTTGAAGCCAGTCGCCGCAGCGGCGGACTCACTGGTGGGTGGAAACAGTTTGTGCTGGACAATAACCTGCGAGAATTCGATGTCTGTGTGTTTAACGAAACACTTATAGGCAAGAAGCCACTGACCCTTGAAGTGAAAGTATTCAGAGTTGATGTGTAG 1044 0.431 MAETCGSSRSWFDDIYWSHFKFMHFVLRLPPGFDQHLALPKTFSDSLKRKLPDNVTLKGPGGAELTVRLSFRDDILYFTYGWQQFAQDHFLEENDLLIFKYNGESQFDVLIFDQKNLCEKVASYFVRDSGQTNKINTDNCKEEQNITSNIDVKGASPEKSARGKSKSKKTRKATVESTCAQQTKRRGRSKGSDAHAGEVEWIPDAEPVSASRNKMVEIVGASSRRAIIENAKKNTLELAEAACPTDGFYVVMRPSHVFGKFYMTIPTKWMTEHFPPQSEDVILCVGKSEWPVKYAFEASRRSGGLTGGWKQFVLDNNLREFDVCVFNETLIGKKPLTLEVKVFRVDV 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1647 347 Pfam B3 DNA binding domain 35 114 IPR003340 GO:0003677
Lele52g1647 347 Pfam B3 DNA binding domain 248 344 IPR003340 GO:0003677
Lele52g1647 347 Gene3D - 226 346 IPR015300 -
Lele52g1647 347 SUPERFAMILY DNA-binding pseudobarrel domain 248 345 IPR015300 -
Lele52g1647 347 SUPERFAMILY DNA-binding pseudobarrel domain 19 114 IPR015300 -
Lele52g1647 347 ProSiteProfiles B3 DNA-binding domain profile. 22 115 IPR003340 GO:0003677
Lele52g1647 347 CDD B3_DNA 24 113 IPR003340 GO:0003677
Lele52g1647 347 Gene3D - 18 118 IPR015300 -
Lele52g1647 347 CDD B3_DNA 248 344 IPR003340 GO:0003677
Lele52g1647 347 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 33 346 IPR044837 -
Lele52g1647 347 SMART B3_2 25 115 IPR003340 GO:0003677
Lele52g1647 347 SMART B3_2 248 346 IPR003340 GO:0003677
Lele52g1647 347 MobiDBLite consensus disorder prediction 148 204 - -
Lele52g1647 347 ProSiteProfiles B3 DNA-binding domain profile. 248 346 IPR003340 GO:0003677
Lele52g1647 347 MobiDBLite consensus disorder prediction 186 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1647 Lele-ChrLele52 20199972 20203078 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1647 1 344 REM Transcription Factor Family AT4G33280 34.375 8.04e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele52g1647 B3 1.7e-15 CL0405