Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1645 ATGGTAAAATCATCCGATAATGGTTTTGGTTCTGTAGCGCCTTTCCTGAAAAAATGTTATGAGATGGTGGACGATGAGTCAACCGACTCGCTCATATCCTGGAGCAAAAGCAATGGCAGTTTTATCATCTGGGATATGACTGAGTTCTCCTTGCGTTTGCTTCCCAAGTATTTCAAGCACAACAATTTCTCCAGTTTCATCAGGCAACTTAATATTTATGGTTTCAGGAAAACTGATACAGATCGCTGGGAATTTGCCAACGATGACTTCATCAGAGGTCAAAAGCACTTACTGAAGAATATATTGAGAAGAAAACATCCACATGTTGCAGATCAGCGAAAGCCATTGCAGCAGCAAGAGAATCGTGATGTGCCTTCTCAAGAAGTTAAAAACCATGACCTATGGAAAGAAGTCGAGAATTTGAAAATCGATAAAAATGCACTCACACAGGAGTTGGTTAAACTTAGGCAGCACCAGGAATCATCTAAGAACAAGTTGCTGCTTCTGACCAATCGGCTTCAAGGAATGGAAAAGAATCAGCAACAGATGTTATCATTCTTAGTCATGGCCATGCAAATCCCTGGTTTCATGGTTCAGCTGCTTCAGCCCAAGGAAAACGGTTGGCGTGCGACCGAGGCAGGCAATATGTTGGAACACAGTGCTTCTGATGGGATGATGATGAAGTATCTACCGCCCTTGAGTGAAAAATTGAAGCCTTTAGTTTCACCATCTGGTGTTTCCAATGAGCAACCGGTGGCCAGTCTCTGTACCGATGGGTTGAAAGATTATTTCATCAATTCTGACTTCTTGAAGGTACTCATGGATGAAAAAATGTGTCAAATAGATCATCATTCTCCATTCATTCTACCGGATTCACCCCGTGATAATAATGCCTGGGAACAGCTTCTTTTAGGCAGTCCCTTCACTGAAAATGAAGATTCAAATCTGGAAAGTGACAACAATGGAATGGAGATCGAGCCTGCTATATGCGAAACAATGTTCGATAAGTTCCAAAATTGTGTTGGGTTGATTCCAGAAATGGACAGAACTCAGAAGAATGGGTTGGAAGTATCTACTAATGGGGTTCATTTGGAGAAGCTGCAGAGTTTGGAATCTCCAACCGAGCAAATTGAATTTTTAGCTTATGAAGCAAATGAAGAATAG 1164 0.4149 MVKSSDNGFGSVAPFLKKCYEMVDDESTDSLISWSKSNGSFIIWDMTEFSLRLLPKYFKHNNFSSFIRQLNIYGFRKTDTDRWEFANDDFIRGQKHLLKNILRRKHPHVADQRKPLQQQENRDVPSQEVKNHDLWKEVENLKIDKNALTQELVKLRQHQESSKNKLLLLTNRLQGMEKNQQQMLSFLVMAMQIPGFMVQLLQPKENGWRATEAGNMLEHSASDGMMMKYLPPLSEKLKPLVSPSGVSNEQPVASLCTDGLKDYFINSDFLKVLMDEKMCQIDHHSPFILPDSPRDNNAWEQLLLGSPFTENEDSNLESDNNGMEIEPAICETMFDKFQNCVGLIPEMDRTQKNGLEVSTNGVHLEKLQSLESPTEQIEFLAYEANEE 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1645 387 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 219 IPR027725 -
Lele52g1645 387 Coils Coil 138 165 - -
Lele52g1645 387 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele52g1645 387 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele52g1645 387 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele52g1645 387 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele52g1645 387 Gene3D - 9 105 IPR036388 -
Lele52g1645 387 SMART hsfneu3 11 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele52g1645 387 SUPERFAMILY "Winged helix" DNA-binding domain 11 104 IPR036390 -
Lele52g1645 387 MobiDBLite consensus disorder prediction 107 128 - -
Lele52g1645 387 FunFam Heat shock transcription factor 1 9 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1645 Lele-ChrLele52 20192436 20195743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1645 1 307 HSF AT1G67970 51.746 6.03e-94 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele52g1645 HSF_DNA-bind 2.1e-30 CL0123