Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1640 ATGGATTTACGGTCCGCTCTTTGCCTTAATCTACAATCTAGATGTGGCATTCATGTCCTTACGTCAATAAACTATGATTTTTTCAGTATTAATGCCATGCATCCAAAGACTAGAAAGATCTTGCAGCTCCTGCGATTGAGACAGATCTTCAACGGCGTATTCCTTAAAGTTAACAAAGCCACAATGAACATGCTGCACAGAGTGGAACCTTATGTGACATATGGATACCCGAATCTGAAGAGTGTTAGAGAACTTATTTACAAGAGGGGTTATGTTAAGGTCGACAAGCAGAGAATTGCTTTAACTGACAACTCCATCGTTGAGCAGGCCCTGGGAAAACACGGAATAATTTGCGCTGAGGATCTTATACATGAGATCATGACTGTTGGGCCCCACTTTAAGGAAGCCAACAACTTCCTTTGGTCATTTAAGCTCAAGGCTCCTTTGGGTGGACTCAAGAAGAAGAGAAACCACTATGTTGAAGGAGGCGATGCTGGCAACAGGGAGAATTACATAAATGAGCTTATCAGAAGAATGAACTAA 543 0.418 MDLRSALCLNLQSRCGIHVLTSINYDFFSINAMHPKTRKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYVKVDKQRIALTDNSIVEQALGKHGIICAEDLIHEIMTVGPHFKEANNFLWSFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1640 180 FunFam 60S ribosomal protein L7 126 180 - -
Lele52g1640 180 ProSitePatterns Ribosomal protein L30 signature. 40 72 IPR018038 -
Lele52g1640 180 TIGRFAM uL30_euk: 60S ribosomal protein uL30 30 180 IPR005998 GO:0000463|GO:0003735|GO:0022625
Lele52g1640 180 CDD Ribosomal_L7_archeal_euk 30 180 IPR035808 -
Lele52g1640 180 FunFam 60S ribosomal protein L7 23 125 - -
Lele52g1640 180 PANTHER 60S RIBOSOMAL PROTEIN L7 30 180 IPR039699 -
Lele52g1640 180 Gene3D - 27 124 IPR036919 -
Lele52g1640 180 Gene3D - 125 180 IPR036919 -
Lele52g1640 180 Pfam Ribosomal protein L30p/L7e 29 72 IPR016082 -
Lele52g1640 180 SUPERFAMILY Ribosomal protein L30p/L7e 29 180 IPR036919 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1640 Lele-ChrLele52 20160080 20162003 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1640 29 180 Cytoplasmic Ribosomal Protein Gene Family AT2G44120 88.816 5.81e-100 286