Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1632 ATGATTTTAATGGATCAGGGCTTTCTGGGAATCCTCAAACTTCGTATAAAAAAAGGAATCAACCTTGCAGTACGTGACACTCGTACAAGTGATCCTTACGTTGTTGTCACCATGCAAGAACAGAAACTGAGGACTAAGGTTGTTGAAGATGACTGCAATCCTGAGTGGAATGATGAGCTGACATTGTATATAAAGAGAATCGATGCTCCAATCATTATAACAGTGTTGGACAAAGACACGTTCACAGAGGACGATCCAATGGGGGAAGTAGAGTTAGACATAAAGCCATTGCTGGAGTGTGCGAAGATAAACAAGACGATGACGGAAGAGCTTGAAGAAGGGATTGTGCTGAATAGAGTTAAACCCAGCGACACTAACTGTCTCTCTGAACAGAGCTTGTGCACTTGGATTGACGGAGCTTTCCGACAAGAAATGCATCTCAGACTGAACAAAGTTGAGAAAGGTGAACTACTCGTCGAAATTGATTGGACTGATCAAGGTTGTCTCGGATTATCAAACGTTGACTTTTAA 531 0.42 MILMDQGFLGILKLRIKKGINLAVRDTRTSDPYVVVTMQEQKLRTKVVEDDCNPEWNDELTLYIKRIDAPIIITVLDKDTFTEDDPMGEVELDIKPLLECAKINKTMTEELEEGIVLNRVKPSDTNCLSEQSLCTWIDGAFRQEMHLRLNKVEKGELLVEIDWTDQGCLGLSNVDF 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1632 176 Gene3D C2 domain 9 168 IPR035892 -
Lele52g1632 176 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 9 165 IPR044562 -
Lele52g1632 176 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 9 104 IPR035892 -
Lele52g1632 176 ProSiteProfiles C2 domain profile. 1 107 IPR000008 -
Lele52g1632 176 SMART C2_3c 11 106 IPR000008 -
Lele52g1632 176 Pfam C2 domain 10 106 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1632 Lele-ChrLele52 20117112 20119412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1632 42 172 C2H2 Transcription Factor Family AT1G70790 46.212 1.80e-37 124
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g1632 52 20117112 20119412 Lele52g1632 52 20117112 20119412 ECH
Lele52g1632 52 20117112 20119412 Lele25g1279 25 8618277 8620385 ECH
Lele52g1632 52 20117112 20119412 Lele26g1289 26 8519685 8521573 ECH
Lele52g1632 52 20117112 20119412 Lele27g0805 27 16119245 16121350 ECH
Lele52g1632 52 20117112 20119412 Lele28g1280 28 8554688 8556882 ECH
Lele50g1676 50 21718180 21721276 Lele52g1632 52 20117112 20119412 hybridization