Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1620 ATGACCAAAGCCCCCGCCCCCGGCCCCGCTCCCGGCTTCGCCGATTTCATCCGGTCAGTTTGCAACAACACCGGCTACGCTGACCTCTGCTACTCCTCCATTTCTCCCTACTCCAAAGTCATCAAGCAAAATCCCGCTGCACTGGCTCGCGTCGGCGTTGCTGTGTCTCACTCAGTGGTCCGTGGCGTATCCACCGACGTCTCCGGTCTCTCCGGCGAAGCCAAGGGCAGAACCGCGGCCCTGATCAGCGACTGCATTTCCACACTTGGGGACGCCTTAGATCAAATAGGTGACGCACTAGGTCAGCTCCGACAGATAGCTGCCAACAAAGGCGGTGATGTCAAGTTCGCAATGGACACGGTGGTGACGGAGATGAGCGCGGCGCTGACGAACGAGGATACGTGTACGGACGAGTTCGAGGATGAACCAGAAGCAGCCGCCACTCCTGGCACCGCAGATTTCATCCGGTCAGTTTGCAACAAAACCGGCTACCCTGACCTCTGCTACTCCTCTGTCTCTCCCTACGCTAATGTCATCAAGCAAAACCCCGCGGCATTGTCTCTCGTCGGCGTCGCTGTGGCTCACTCAGTGGTCCACAGTGTAGCCGCTGATGTCTCCAGTCTCTCCGGCGACAGAGCTGCCGGCGCGATCAGCGACTGCATTACCACCCTTGGGGACGCCACAGATCAAATAAGTGACTCACTAGGTCAGCTCCGAAAGATAGCTGCCGGCAAAGGCGGCGATTTCAAGTTCGCAATGGACTCGGTGCTGACGGCGATGAGCGCGGCAATGACGAACGAGGATACGTGTTTAGACGAGTTCCAGGATGAAGAGGAAGGTCCGGTGAAAAAGAAGGTAGTGGATCGCCTGACGGAGGCGAACAAGTTAACAAGCATCGCCTTGGTTCCAGATGAGCAGCATTCAGACTTGGATGATCGCAGCGATGACGGAGGAGCAGGCGTGCAGCGATTTGACGGCGGTGAAGAAGTTTATCAGTAG 999 0.5726 MTKAPAPGPAPGFADFIRSVCNNTGYADLCYSSISPYSKVIKQNPAALARVGVAVSHSVVRGVSTDVSGLSGEAKGRTAALISDCISTLGDALDQIGDALGQLRQIAANKGGDVKFAMDTVVTEMSAALTNEDTCTDEFEDEPEAAATPGTADFIRSVCNKTGYPDLCYSSVSPYANVIKQNPAALSLVGVAVAHSVVHSVAADVSSLSGDRAAGAISDCITTLGDATDQISDSLGQLRKIAAGKGGDFKFAMDSVLTAMSAAMTNEDTCLDEFQDEEEGPVKKKVVDRLTEANKLTSIALVPDEQHSDLDDRSDDGGAGVQRFDGGEEVYQ 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1620 332 Pfam Plant invertase/pectin methylesterase inhibitor 153 301 IPR006501 GO:0004857
Lele52g1620 332 Pfam Plant invertase/pectin methylesterase inhibitor 15 145 IPR006501 GO:0004857
Lele52g1620 332 CDD PMEI-like_3 19 141 - -
Lele52g1620 332 CDD PMEI-like_3 157 301 - -
Lele52g1620 332 Gene3D Invertase/pectin methylesterase inhibitor family protein 152 303 IPR035513 -
Lele52g1620 332 Gene3D Invertase/pectin methylesterase inhibitor family protein 13 151 IPR035513 -
Lele52g1620 332 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 153 302 IPR035513 -
Lele52g1620 332 TIGRFAM PME_inhib: pectinesterase inhibitor domain 14 143 IPR006501 GO:0004857
Lele52g1620 332 TIGRFAM PME_inhib: pectinesterase inhibitor domain 148 302 IPR006501 GO:0004857
Lele52g1620 332 MobiDBLite consensus disorder prediction 305 319 - -
Lele52g1620 332 MobiDBLite consensus disorder prediction 301 332 - -
Lele52g1620 332 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 15 142 IPR035513 -
Lele52g1620 332 PANTHER PECTINESTERASE INHIBITOR-LIKE 151 301 - -
Lele52g1620 332 SMART PMEI_2 12 146 IPR006501 GO:0004857
Lele52g1620 332 SMART PMEI_2 150 303 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1620 Lele-ChrLele52 20022240 20027402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1620 134 311 Carbohydrate Esterase AT1G53830 25.926 5.47e-10 58.5