Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1590 ATGGCTCGCAATAACGAGGATGAGGATATAGCAAATATGGAAGAAGGTCAAAGTAAAGGATCTGGTTTCTGTGGTTCTTCTTCCACAGTTCTAATCATACAGAAGATAATTGCAGAGGCAATAGGGACATACATGGTGGTATTTGCAGGGTGTTGTTCAGTGGTTTTGAATGTGTTAGATGGGAGAGTGACATTTCCTGGGGTGTGTGTAGTTTGGGGTTTAATAGTAATGATAATGGTTTATTCGGTGGGGCACATCTCCGGCGGCCACTTTAACCCTGCGGTGACGGTGGCGTTCACCCTTTTCCGGCAGTTTCCTTGGAGACAGGTACCAATGTATATGATAGCACAGTTGGTGGGATCATTACTGGCCAGTGGGACGTTGTACATGTTGTTCGAGGTAGACGACAAGTCGTATTTTGGGACATTGCCTTCAGGATCAAATGTTCAGTCACTTGTGATGGAGATTATCACTTCTTTCTTGTTGATGTTCGTTGTTTCTGCTGTTGCCACTGATACTAGAGCTATCGGAGAATTGGCAGGAATTGCAGTTGGCATGACGATTTGTGTGGATGTCTTCATTGCTGGGCCAGTGTCAGGAGCATCAATGAACCCAGCAAGAAGTATTGGGCCAGCAATAGTGATGAACACATACAAGTCATTATGGGTTTATATAGCAGGCCCATTTATTGGCACCATTTTTGGGGCCTTTGCCTACAGCCTTATTAGATTAACCGACAAACCTCTCCGAGAAATCAAGAAAGTCCCCGGCTCTTTGTTCAAAAGCGTCTCGACTCGCACTTAA 804 0.449 MARNNEDEDIANMEEGQSKGSGFCGSSSTVLIIQKIIAEAIGTYMVVFAGCCSVVLNVLDGRVTFPGVCVVWGLIVMIMVYSVGHISGGHFNPAVTVAFTLFRQFPWRQVPMYMIAQLVGSLLASGTLYMLFEVDDKSYFGTLPSGSNVQSLVMEIITSFLLMFVVSAVATDTRAIGELAGIAVGMTICVDVFIAGPVSGASMNPARSIGPAIVMNTYKSLWVYIAGPFIGTIFGAFAYSLIRLTDKPLREIKKVPGSLFKSVSTRT 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1590 267 CDD MIP 34 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele52g1590 267 Pfam Major intrinsic protein 28 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele52g1590 267 PANTHER AQUAPORIN NIP2-1 13 251 IPR034294 -
Lele52g1590 267 ProSitePatterns MIP family signature. 90 98 IPR022357 -
Lele52g1590 267 MobiDBLite consensus disorder prediction 1 23 - -
Lele52g1590 267 SUPERFAMILY Aquaporin-like 31 251 IPR023271 -
Lele52g1590 267 Gene3D Glycerol uptake facilitator protein. 1 252 IPR023271 -
Lele52g1590 267 TIGRFAM MIP: MIP family channel proteins 38 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele52g1590 267 PRINTS Major intrinsic protein family signature 154 172 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele52g1590 267 PRINTS Major intrinsic protein family signature 72 96 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele52g1590 267 PRINTS Major intrinsic protein family signature 109 128 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele52g1590 267 PRINTS Major intrinsic protein family signature 222 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele52g1590 267 PRINTS Major intrinsic protein family signature 185 207 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lele52g1590 267 PRINTS Major intrinsic protein family signature 34 53 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1590 Lele-ChrLele52 19803590 19805969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1590 6 266 Major Intrinsic Protein MIP AT5G37820 61.567 7.10e-117 336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g1636 50 21417040 21419595 Lele52g1590 52 19803590 19805969 hybridization