Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1587 ATGGAGATTGGTGTGGGAGGGCCGTCATCGTTGTCTTACTATACCATTCTTGGTGTTAGTTCAGATTCAACCGCTACAGAAATAAGGGGAGCTTATCGCAAGCTTGCTTTACAATGGCATCCAGATAGGTGGACAAGAACTCCTTCTTTGTTGAGTGAAGCTAAACAGAAATTTCAGCAAATTCAAGAAGCTTATTCAGTTCTATCAGACCACAAGAAAAGAACAGTGTACGATGCAGGGTTGTATGATCCTGAAGAAGAAGAAGATGAGGGATTTTCTGAGTTTATGGGAGAGATGGTGTCTCTCATGGCTCAAGTGAGGAGAGAGGGAAAGGATTATTACAGTATGGAGGAGTTACAGAGCATGTTTACTGAGATGGCTCGTGATTTTAATCAGTCACCTTCATCTTCATGGTGTTGCGGGCCCACCATTGTTGATGATGATGAGTCCCGTCACTTCTCAAAGAAGATCCGTTCGGACAAACATGGCAGAACCTGA 498 0.4357 MEIGVGGPSSLSYYTILGVSSDSTATEIRGAYRKLALQWHPDRWTRTPSLLSEAKQKFQQIQEAYSVLSDHKKRTVYDAGLYDPEEEEDEGFSEFMGEMVSLMAQVRREGKDYYSMEELQSMFTEMARDFNQSPSSSWCCGPTIVDDDESRHFSKKIRSDKHGRT 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1587 165 SUPERFAMILY Chaperone J-domain 10 84 IPR036869 -
Lele52g1587 165 PANTHER PUTATIVE, EXPRESSED-RELATED 10 134 - -
Lele52g1587 165 ProSiteProfiles dnaJ domain profile. 12 81 IPR001623 -
Lele52g1587 165 Gene3D DnaJ domain 10 136 IPR036869 -
Lele52g1587 165 SMART dnaj_3 11 73 IPR001623 -
Lele52g1587 165 CDD DnaJ 13 70 IPR001623 -
Lele52g1587 165 Pfam DnaJ domain 13 78 IPR001623 -
Lele52g1587 165 ProSitePatterns Nt-dnaJ domain signature. 58 77 IPR018253 -
Lele52g1587 165 MobiDBLite consensus disorder prediction 146 165 - -
Lele52g1587 165 PRINTS DnaJ domain signature 53 73 IPR001623 -
Lele52g1587 165 PRINTS DnaJ domain signature 32 47 IPR001623 -
Lele52g1587 165 PRINTS DnaJ domain signature 14 32 IPR001623 -
Lele52g1587 165 PRINTS DnaJ domain signature 155 165 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1587 Lele-ChrLele52 19782112 19783225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1587 13 79 C2H2 Transcription Factor Family AT1G74250 47.059 4.39e-14 67.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g1587 52 19782112 19783225 Lele52g1587 52 19782112 19783225 ECH
Lele49g1210 49 8062458 8063580 Lele52g1587 52 19782112 19783225 hybridization
Lele50g1631 50 21393706 21394788 Lele52g1587 52 19782112 19783225 hybridization