Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1578 ATGGCCGGCGGAGACGCCAGCGACGGGGAACGTACGCCGGAACTCCTCGACCTGGTTCATGATATCGCTGCAATGTACGGTGGGGCAGCTTTTGGTTCCTCCTCCTCCTCCGCCATTGCCGCCGATGCTGTGTTCAAGAAGGACTGCATCGATCTGGTTCGTCGGATCTCACTTCTTTCCCATTTGTTCGAGGAGATTAGGGATTTAAAGGTTTTTAATTCTACTGAGCTGGATGCTTCCACTTCTTCCAATGGCACTCCCTCTTCCTGGTCCTTTGATCTGGTGCTTGCTCTTCAATCTGCTAAGCGCCTTCTATCCGTCGCTAGTAACTTTCATTCCAATTGTACTTCTGATGAAGATGCAAAGACTATTGTCTTCCAATTTCAGCGCGTGACATGGAAATTGGAGAAACTTTTGAGCGAATTACCTTATGACCATTTGGACATATCAGAAGAAGTTAGAGAACAGGTGGAGTTGGTGAGAACACAATTGAGTCGAGCCACTGAAAGATATGGGTTTATGATCTCAAACATGCCATCTAGTGACATATCCCAGCAACTGGCTGAAACCGTTAGTCAGGTTAATGGAAAATCTAGGAATCAGTTGCAAAAGCAAAACAGCTGCCCTGAGTATTTACTAACACTAGACAACATTCCTAAAAGCAACAGAGGGAAAAAATGCGGCACATGTCAGGCAAATCTTCACTTGGAAAGGGCAAGGAGCACCCCTGCCTCTTCGGAGGCTTCTTTATCAACTGTGATTCATCCTGAAAGTCAAGAAACTTCCGAGAAGAAGGGCCTAGCAAGAGTTAAAACCCCTGAAGCTATTGTAATTCCTGAAGATTTTCTTTGCCCTATATCATTGGAATTGATGAGGGATCCCGTTATTGTGGCCACAGGCCAGACATATGAGCGGTCTTACATACAGAGATGGATAGCAAGTGGAAATGTAACTTGTCCAAAAACTCGCCAGAAGTTGGAAAACTTGAACCTAACACCAAATTATGTTTTAAGGAGCCTTATCAATCAGTGGTGCATAGATTACAACTTTGAGCAGCCAAGAGGACTGACCCATGGCAAGCTAAAACAGAGTGATGGATCATTTAGAGATGTTACGGGTGACATGGCAACCATTGAGTCTCTGATCTTGAAGCTCTCAAGCAATTCCATTGAGGATTGTAGAGCAGCTGTCACTGAAATCCGATCGCTTTCAAAACGGAGCACAGACAACAGAATACTAATCGCTGAAGCTGGAGCGATTCCAGTTCTGGTCAACCTGTTAACATCAGAAGATGTATTGACACAAGAGAATGCAGTTACTTCAATTCTCAACCTCTCTATATATGAAAACAACAAGGGACTTATAATGCTTGCAGGTGCCATCCCCTCAATTGTGCAAGTTCTTAGAGCTGGAAGCATGGAAGCAAGAGAAAATGCTGCGGCAACCCTTTTTAGCTTATCATTTCCTGATGAGAACAAAATAATAATTGGTTCCTCAGGAGCTCTCCCTCCTTTGATAGAATTGCTCCAAAATGGCAGCCCTAGAGGGAAGAAGGATGCAGCATCAGCATTATTCTACTTATGCATTAATGAAGGGAACAAGGGTAGGGCCATTAGATCAGGGATCATCCGTGCATTGTTAAAGATGCTTACAGATTCAAGAAAATCAATGGTTGATGAAGCCCTAACAATAATGTCAGTTCTTGGCAGCCACCATGGGGCAAGGGTTTCCATTGTAAATGCCGGCACTATGCCTGTTTTGATTGATCTTTTGAGTACAGGTCTGCCTCGACACAAAGAGAATGCAGCCGCCATTTTGTTTTCCTTGTGTAAGAGAGATGCTAATAATCTTGCTTGTTTAAGTACTCTTGGTGGTGTCAAGCCATTGACTGAACTTGCTCTCAGTGGCACTGAGAGGGCTAAACGGAAGGCCACTTCATTATTGGAACATATTGGCAAGTCCCAGGAGCTTTGA 1974 0.4428 MAGGDASDGERTPELLDLVHDIAAMYGGAAFGSSSSSAIAADAVFKKDCIDLVRRISLLSHLFEEIRDLKVFNSTELDASTSSNGTPSSWSFDLVLALQSAKRLLSVASNFHSNCTSDEDAKTIVFQFQRVTWKLEKLLSELPYDHLDISEEVREQVELVRTQLSRATERYGFMISNMPSSDISQQLAETVSQVNGKSRNQLQKQNSCPEYLLTLDNIPKSNRGKKCGTCQANLHLERARSTPASSEASLSTVIHPESQETSEKKGLARVKTPEAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIASGNVTCPKTRQKLENLNLTPNYVLRSLINQWCIDYNFEQPRGLTHGKLKQSDGSFRDVTGDMATIESLILKLSSNSIEDCRAAVTEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQENAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGSMEARENAAATLFSLSFPDENKIIIGSSGALPPLIELLQNGSPRGKKDAASALFYLCINEGNKGRAIRSGIIRALLKMLTDSRKSMVDEALTIMSVLGSHHGARVSIVNAGTMPVLIDLLSTGLPRHKENAAAILFSLCKRDANNLACLSTLGGVKPLTELALSGTERAKRKATSLLEHIGKSQEL 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1578 657 MobiDBLite consensus disorder prediction 241 267 - -
Lele52g1578 657 Pfam Armadillo/beta-catenin-like repeat 408 446 IPR000225 GO:0005515
Lele52g1578 657 Pfam Armadillo/beta-catenin-like repeat 490 528 IPR000225 GO:0005515
Lele52g1578 657 SUPERFAMILY ARM repeat 377 652 IPR016024 -
Lele52g1578 657 CDD RING-Ubox_PUB 282 324 IPR045210 -
Lele52g1578 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 418 460 IPR000225 GO:0005515
Lele52g1578 657 PANTHER U BOX DOMAIN-CONTAINING 46 650 - -
Lele52g1578 657 SUPERFAMILY RING/U-box 277 351 - -
Lele52g1578 657 Coils Coil 150 170 - -
Lele52g1578 657 FunFam RING-type E3 ubiquitin transferase 273 351 - -
Lele52g1578 657 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 459 501 IPR000225 GO:0005515
Lele52g1578 657 SMART arm_5 613 653 IPR000225 GO:0005515
Lele52g1578 657 SMART arm_5 571 611 IPR000225 GO:0005515
Lele52g1578 657 SMART arm_5 530 570 IPR000225 GO:0005515
Lele52g1578 657 SMART arm_5 448 488 IPR000225 GO:0005515
Lele52g1578 657 SMART arm_5 407 447 IPR000225 GO:0005515
Lele52g1578 657 SMART arm_5 489 529 IPR000225 GO:0005515
Lele52g1578 657 ProSiteProfiles U-box domain profile. 277 351 IPR003613 GO:0004842|GO:0016567
Lele52g1578 657 Gene3D - 356 572 IPR011989 -
Lele52g1578 657 Gene3D - 573 656 IPR011989 -
Lele52g1578 657 SMART Ubox_2 281 344 IPR003613 GO:0004842|GO:0016567
Lele52g1578 657 Pfam U-box domain 278 345 IPR003613 GO:0004842|GO:0016567
Lele52g1578 657 FunFam RING-type E3 ubiquitin transferase 363 657 - -
Lele52g1578 657 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 351 IPR013083 -
Lele52g1578 657 MobiDBLite consensus disorder prediction 241 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1578 Lele-ChrLele52 19658525 19661609 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1578 1 654 U-box Gene Family AT1G23030 55.489 0.0 657
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g1578 52 19658525 19661609 Lele52g1578 52 19658525 19661609 ECH
Lele50g1625 50 21308513 21311596 Lele52g1578 52 19658525 19661609 hybridization