Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1576 ATGGAGAGCATGGCTACCTTTTCACGGTGGCACGGTACCGGTGAATGGATTGCTTCAGCGGATGTCTCTGGCACTGTTCGGATCTGGGGCACCCATAACGATTTTGTTCTTAAGAATGAGTTCCGGGTCCTGTCGGGTCGGATAGATGACCTTCAGTGGTCCGCTGACGGTTTGAGGATCGTCGCTTGCGGGGATGGCAAAGGGAAGTCACTTGTTCGTGCTTTTATGACATCTGGTCATAAAAGGTGGGATTCAGGCAGCACTGTTGGGGATTTTGATGGTCATTCACGGCGAGTTTTAAGTTGGGCATTCAAACCAACAAGGCGTTTTCGTATTGTTACATGTGGGGAAGACTTTTTGGTGAATTTCTATGATGGTCCTCCATTCAAGTTCAATATGTCCATCAGGGACCATTCAAATTTTGTGAATTGTGTTAGATTTTCCCCTGATGGAACCAAATTCATAAATGTGAGTTCAGATAGAAAGGGTATCATATATGATGGGAAGAGTGGGGACAAACTTGGCGAGTTGTCTGCAGAGGCTGGCCATAAGGGCAGCATATATGCTGTCCTTACTGTGTCTGCTGATAAATCTGCAAAGATCTGGGATATTCTTGAGGATGGAAGTGGAAGTTTAAATAAGACTTTATCAAGTTCTGAATCTGGTGGTGTGGAGGATATGCATGTTGGCATTGGTTGCTGTGGTAAATTAGACAGTAAACAATTCGGATTAATTAAATTGTTAGCAGCCGGTGAAGAAGAAGTCATTACAGCTGGATTTGACAGGAAGGTATGTAAGGTATGGAGGGTTCCTTTGGAAGGGGCTAATTTCGGAGCTCCTGAGCAAATTGATGTTGGCAGTCAGCCAAAAGACTTGAGCCTTGCCCTTGGTTCTCCTAAACTCGCTTTGGTAGCAATTGAATCTGGAGTTGTTTTGCTTAATGGTTCAGAAATTGTCGCTACTCATAACCTCGACTTCGCTGTGACTGCATCTGCAATTTCACCCGATGGAAGTGAAGCAATTGTGAAGCTTAATAACATGTTATTTAACTCCGCACGTATTAACTGCCTGGCTTGGTCACCTGATAACACCCTCATAGCTACTGGGTCACTTGATACATGCGTCATCATATATGAAATTGGGAAGCCAGCATCAAGCCGCAGAACCATAAAAGCGGCTCATTTAGGTGGAGTCTACGGTTTGACTTTTATTGATAATGATAGTGTGGTCAGTTCGGGAGAAGATGGCTGTATTCGTGTTTGGAAATTGGCTTCGGAATAA 1281 0.4426 MESMATFSRWHGTGEWIASADVSGTVRIWGTHNDFVLKNEFRVLSGRIDDLQWSADGLRIVACGDGKGKSLVRAFMTSGHKRWDSGSTVGDFDGHSRRVLSWAFKPTRRFRIVTCGEDFLVNFYDGPPFKFNMSIRDHSNFVNCVRFSPDGTKFINVSSDRKGIIYDGKSGDKLGELSAEAGHKGSIYAVLTVSADKSAKIWDILEDGSGSLNKTLSSSESGGVEDMHVGIGCCGKLDSKQFGLIKLLAAGEEEVITAGFDRKVCKVWRVPLEGANFGAPEQIDVGSQPKDLSLALGSPKLALVAIESGVVLLNGSEIVATHNLDFAVTASAISPDGSEAIVKLNNMLFNSARINCLAWSPDNTLIATGSLDTCVIIYEIGKPASSRRTIKAAHLGGVYGLTFIDNDSVVSSGEDGCIRVWKLASE 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1576 426 ProSiteProfiles Trp-Asp (WD) repeats profile. 391 426 IPR001680 GO:0005515
Lele52g1576 426 Pfam WD domain, G-beta repeat 10 29 IPR001680 GO:0005515
Lele52g1576 426 Pfam WD domain, G-beta repeat 174 203 IPR001680 GO:0005515
Lele52g1576 426 Pfam WD domain, G-beta repeat 354 378 IPR001680 GO:0005515
Lele52g1576 426 Pfam WD domain, G-beta repeat 134 162 IPR001680 GO:0005515
Lele52g1576 426 Pfam WD domain, G-beta repeat 393 422 IPR001680 GO:0005515
Lele52g1576 426 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 391 426 - -
Lele52g1576 426 ProSiteProfiles Trp-Asp (WD) repeats profile. 135 176 IPR001680 GO:0005515
Lele52g1576 426 SMART WD40_4 170 203 IPR001680 GO:0005515
Lele52g1576 426 SMART WD40_4 341 379 IPR001680 GO:0005515
Lele52g1576 426 SMART WD40_4 383 422 IPR001680 GO:0005515
Lele52g1576 426 SMART WD40_4 128 167 IPR001680 GO:0005515
Lele52g1576 426 SMART WD40_4 34 76 IPR001680 GO:0005515
Lele52g1576 426 SMART WD40_4 85 125 IPR001680 GO:0005515
Lele52g1576 426 Gene3D - 2 256 IPR015943 GO:0005515
Lele52g1576 426 ProSiteProfiles Trp-Asp (WD) repeats profile. 347 380 IPR001680 GO:0005515
Lele52g1576 426 SUPERFAMILY WD40 repeat-like 8 424 IPR036322 GO:0005515
Lele52g1576 426 Gene3D - 338 425 IPR015943 GO:0005515
Lele52g1576 426 PANTHER WD-REPEATCONTAINING PROTEIN WDR1 231 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1576 Lele-ChrLele52 19645877 19649454 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1220 49 8171710 8175283 Lele52g1576 52 19645877 19649454 hybridization
Lele50g1623 50 21286310 21289873 Lele52g1576 52 19645877 19649454 hybridization