Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1575 ATGAACAAAGGAGCTTGGTCTAAACAAGAAGACCAGAAACTCATTGATTATATCAAGAAACATGGCGAGGGTTGCTGGCGTACTCTTCCTGAAGCCGCAGCTGGAAGATTACCCGGAAGAACAGACAATGAAGTAAAGAATTATTGGAACTCTCATCTAAGAAGGAAGCTCATCAACATGGGAATCGATCCAAATAATCACAGACTGAGTCACAAATTCCCTTCTCTTCATCAAAATCATCATGCAACATCTGGTAGTTCAGCATCATCCGGCTCGAAACAAAAAGGGGCCAAAAACAACAACAACAATATTGAGCCAACAAAAAATAAGCCTAAAACTGGTGATGACAATATTAATCATGAACAAGTAGTTTCAGATGCTGCAAGTGGCTTGGAAGATGAATCCTCTGCCTTATTACCAGATCTAAACCTTGATCTCACCATCAACATTCCTTCAAGTGCTGCTTATGAACACAGTCATCAAAAGCCAATCCTTCCTCATGAATCTTCTAAGTCTCCAAGGACTATGCAATTAGCTTCCTCTCCAACCCTACTTCTGTTTCAGTGA 567 0.4056 MNKGAWSKQEDQKLIDYIKKHGEGCWRTLPEAAAGRLPGRTDNEVKNYWNSHLRRKLINMGIDPNNHRLSHKFPSLHQNHHATSGSSASSGSKQKGAKNNNNNIEPTKNKPKTGDDNINHEQVVSDAASGLEDESSALLPDLNLDLTINIPSSAAYEHSHQKPILPHESSKSPRTMQLASSPTLLLFQ 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1575 188 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
Lele52g1575 188 Pfam Myb-like DNA-binding domain 3 53 IPR001005 -
Lele52g1575 188 SUPERFAMILY Homeodomain-like 2 63 IPR009057 -
Lele52g1575 188 MobiDBLite consensus disorder prediction 155 188 - -
Lele52g1575 188 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 33 148 - -
Lele52g1575 188 MobiDBLite consensus disorder prediction 77 108 - -
Lele52g1575 188 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Lele52g1575 188 CDD SANT 5 53 IPR001005 -
Lele52g1575 188 Gene3D - 1 58 - -
Lele52g1575 188 MobiDBLite consensus disorder prediction 77 118 - -
Lele52g1575 188 MobiDBLite consensus disorder prediction 168 188 - -
Lele52g1575 188 SMART sant 2 55 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1575 Lele-ChrLele52 19635840 19637537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1575 2 167 MYB Transcription Factor Family AT4G38620 34.389 1.97e-31 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele52g1575 Myb_DNA-binding 2.6e-14 CL0123