Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1566 ATGTATCCAATGCCAAGTTCTGATTCATTGCTTCAAGCAGCCATAATCGCTCGTTCCTCTCCCATTCAAAATTTGCTACACCTTCTATTCTACTCCTTCCAAAACTTGTGCTTTGGCTCTTCTCGGAGTTGGTCTGCTCCTCACGTTCATGCGATCTTCTTCATTTCTGGAACTCCCATTGCCGAATTTCTTCACTTCAATGCTCTCTATCTGACCCAATGGACCTTTCTCGTCTCCATCTTCGTTGAATGAGATTTTGTTCGTGAGCTCAGGGAAATTCGAGATGGCCTGGGTAATATATCTAGAAGAGGGATAGAGGCCAAGCGTAATTATTGCCGTGGAAAATCTCTTATTGCACCTGAATTGTCCTCACCGGCATCGTCATCTTTGTTAGTGACTGAGCAGAGCCGCTGGGCTAACTTACCACCTGAGTTGTTATTAGACATAATTCAAAGGGTGGAAGCAAGTGAAACTTCCTGGCCTGCCCGGAGAGCGGTTGTAGCCTGTGCTTCAGTTTGTATGTCATGGAGAAAAATAACAGAGGAGGTGGTAAAGACACCAGAACAGTGTGGGGGGCTTACTTTTCCCATATCGCTGAAGCAGCCTGGTCCAAGAGAGACTCCAATACAGTGTTTTATAAAGAGAGAAAGGGCGACTTCAAAATATCATTTATATCTTGGTTTGAGCCCAGCTCTCTCTAGGGATATGAGCAAACTGTTACTGGCAGCGAAGAAGATTAGACGGACAACATGTACAGAATTCTTGATATCCTTGGTCGCAGATGATTTTTCTAAAGCAAACAATACTTATGTCGGAAAGCTGAGGTCTAATTTTCTAGGCACCAAGTTCATGATCTCGGATAGTCAGCTTCCGCTTGACTCTTCCCTTCCATTGAATAGTAAATTGCAGCCAAGAATCCATTCAAAGCATGTTCTTCCAAGGGCTGCTGCTGCAAAGAGTAATGTGGCCACCATATCTTATGAGCTCAACGTTCTTCGCACAAGAGGTCCAAGGAGAATGCGATGTACGATGCATTCAATTCCATTATCTTCCATCCAAGAAGGGGGCACTGCCCCTACTCCTTTGAAGTTTACTAATGGCCTTGATGAACATTTATCTACTGCACACATATCAAAAGGGGAAAAGCCGGGAGTTGAGTATGACTCCAATAGTGATGACAAGCCACCAGAATCGAACCACGTTGCAGGGGAGCCGCTGATTTTGAAAAATAAAGCTCCTAGATGGCATGAACAACTGCAGTGTTGGTGCTTGAATTTCAAGGGACGTGTTACAGTGGCCTCTGTGAAGAACTTCCAGCTTGTAGCCGCTGCAGAACCTCCACAAAATGTTTCAGCGGCAGAACAAGATAGAGTAATACTACAATTTGGGAAGATTGGAAAGGACATTTTCACCATGGATTACCGATATCCCCTCTCTGCGCTTCAAGCCTTTGCAATCTGCTTGAGCAGCTTTGACACGAAACATGCTTGCGAGTGA 1497 0.4476 MYPMPSSDSLLQAAIIARSSPIQNLLHLLFYSFQNLCFGSSRSWSAPHVHAIFFISGTPIAEFLHFNALYLTQWTFLVSIFVEXDFVRELREIRDGLGNISRRGIEAKRNYCRGKSLIAPELSSPASSSLLVTEQSRWANLPPELLLDIIQRVEASETSWPARRAVVACASVCMSWRKITEEVVKTPEQCGGLTFPISLKQPGPRETPIQCFIKRERATSKYHLYLGLSPALSRDMSKLLLAAKKIRRTTCTEFLISLVADDFSKANNTYVGKLRSNFLGTKFMISDSQLPLDSSLPLNSKLQPRIHSKHVLPRAAAAKSNVATISYELNVLRTRGPRRMRCTMHSIPLSSIQEGGTAPTPLKFTNGLDEHLSTAHISKGEKPGVEYDSNSDDKPPESNHVAGEPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPPQNVSAAEQDRVILQFGKIGKDIFTMDYRYPLSALQAFAICLSSFDTKHACE 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1566 498 ProSitePatterns Tub family signature 1. 426 439 IPR018066 -
Lele52g1566 498 PANTHER TUBBY-RELATED 128 496 - -
Lele52g1566 498 SUPERFAMILY F-box domain 135 180 IPR036047 GO:0005515
Lele52g1566 498 MobiDBLite consensus disorder prediction 377 399 - -
Lele52g1566 498 Gene3D - 133 184 - -
Lele52g1566 498 Gene3D Tubby Protein; Chain A 196 498 IPR025659 -
Lele52g1566 498 MobiDBLite consensus disorder prediction 377 401 - -
Lele52g1566 498 ProSitePatterns Tub family signature 2. 483 498 IPR018066 -
Lele52g1566 498 Pfam F-box domain 138 183 IPR001810 GO:0005515
Lele52g1566 498 SUPERFAMILY Tubby C-terminal domain-like 187 498 IPR025659 -
Lele52g1566 498 Pfam Tub family 199 493 IPR000007 -
Lele52g1566 498 PRINTS Tubby superfamily signature 455 474 IPR000007 -
Lele52g1566 498 PRINTS Tubby superfamily signature 319 346 IPR000007 -
Lele52g1566 498 PRINTS Tubby superfamily signature 426 442 IPR000007 -
Lele52g1566 498 PRINTS Tubby superfamily signature 408 425 IPR000007 -
Lele52g1566 498 PRINTS Tubby superfamily signature 476 498 IPR000007 -
Lele52g1566 498 PRINTS Tubby superfamily signature 254 270 IPR000007 -
Lele52g1566 498 PRINTS Tubby superfamily signature 270 294 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1566 Lele-ChrLele52 19548415 19551740 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1566 113 498 TUB Transcription Factor Family AT1G47270 62.341 5.14e-162 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele52g1566 Tub 3.4e-103 CL0395