Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1525 ATGGGATTGCACAACCAGCTAAACGATGTCGCTTCAGATTCGATTCCTCTACTTTTCTTGGCTCTCGTCGCTGACTGCCTCAACCAGCTCCGTTCCTTCCTTATCGCCCTCCTCCAATCGCTCGGACTCTCCAGATTCGACCCAAACCCTGTCGTTGTTGATGATGGATTTTTCACCGCCGTCGGATCGGGCCTTGCCAGCTTAATCGTCCTCTCCGAGCAGCTCAATCTTAATCGCCGTGTCTCCTACAGATACTCCATCGTAGGTGGCGGCGATGATGGTCTCGCCGGCATGATTGGGCCTCCCAAGTGTGTTGTGTGCCAGAGCACGTTCGAAGATGGGGACCAAGTTCGACGGCTTCCCTGTCGCCATGTTTTTCACCGATGCTGCTTCGATGGCTGGCTGGACCACCTCAATTTCAACTGCCCCCTCTGTCGGACACCGCTGGTGTCCGACGAGCGCGTGGCCCTTGCTGAGCGGCGCGTCGTTCCGGAGCTTGTATCCTGGTTCTCTTTTCGATGA 522 0.5613 MGLHNQLNDVASDSIPLLFLALVADCLNQLRSFLIALLQSLGLSRFDPNPVVVDDGFFTAVGSGLASLIVLSEQLNLNRRVSYRYSIVGGGDDGLAGMIGPPKCVVCQSTFEDGDQVRRLPCRHVFHRCCFDGWLDHLNFNCPLCRTPLVSDERVALAERRVVPELVSWFSFR 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1525 173 Pfam Ring finger domain 103 146 IPR001841 -
Lele52g1525 173 PANTHER RING ZINC FINGER PROTEIN-RELATED 69 156 - -
Lele52g1525 173 SUPERFAMILY RING/U-box 103 152 - -
Lele52g1525 173 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Lele52g1525 173 SMART ring_2 104 145 IPR001841 -
Lele52g1525 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 160 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1525 Lele-ChrLele52 19257277 19257798 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1525 1 173 C3H Transcription Factor Family AT1G15100 47.977 1.30e-44 143
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g1255 49 8436879 8437400 Lele52g1525 52 19257277 19257798 hybridization
Lele50g1572 50 20886708 20887229 Lele52g1525 52 19257277 19257798 hybridization