Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1517 ATGGAAGATCGAACAAGATTGTCACTGTTCAACTGTGTTCCAAGCTTCGCACAAGGCACTGATATTTTACTCGTTCATAATGACACTTTGTGTCTTCCCTATCTATCTTCACTTCTTCGCCAATGCTCATTCAGAGTTACTGCAACAAATCAAGCAACAGCGGCTATTGACATGGTTTGTGAACAAGAAGGAAGGTTCAAACTTATGATGGCGAAAGCTAACATGCCTGACATGGACACCATTTCTTTCCTCAATACACTTCTTCTCAAGCATATAACTGTCATATATATTCATCCAACTCCAAGATTGATACAAGAGATCATGAATGTTCCTTACCTGACATATGGCAATATTGCTAGCCATCTACAGAAATTCAAAGCAAGGTGTCTTCAGGATAAGTGCAATGGAACCAAGTCATCCTCATCAATACAGAGACAGTGTTACCCAGGTTACCTGACTTTAGCTGCTTTCCAAAATGAGAACCAGAGTCAAAACCATTTTTCAGTGAACTTCCCTGAAACCAAAGGACTGGAAAATTTCCAGATGCAGGAAAACTTTTCATGTCAACATCAAGCAGAATTGGTCAATTATGGAAACCAAGATCTAGAAGCTGTAGTGAGAGGAGCTGTGCCAGATTCTTTAATGGATAAAAACCAGTATGATAACTTTGGAAATGGATTCACTGAAGATGATAGTGCCCAAAACTCTGACATACAAATGAATCCTATCTTTGGAAACAATTTTAGTCCACACAATTCTGCTATATTAGGAGAACTTGAGCCATGTGATTCAATGAATCAAAGCCAAAACCTTACAGAAGATACAAATATATTAAGAATTACTGGAGGAGATAGTGAAAGATATGACTGTTTTAGAAGGGCTAAGCCATCTGCATTTGTGGGAGGACATGAATTAACTGATCAAAATAAAACCTCTTTTACAGAAAATGACAGTGTCTTGAGATTTCTTGGAGAAGGATATGGCCAAAACTCTGAGATGCTAAGAAATTCAGTCCTTGGTTACAGCTTTGGTGTGCAGAATTCTGATAACTACAACCCTAGTTGTGTTAAATTTTTGAAGTCCAAGATTGATGATTTGAAGAATCAAACTCAAAATTCAACAGAATATAATGATATTTCTAGATTTCTTCTTGAAGAGGATTGTGATACTACCCTAAACTCTAAGATACTGAGGAATTCTGTCTCTGGAAACAGCTCTGGTTACTGCAATACTGAAAGTGTAGTAAGATCATGTTCTGTAGTGGGAGGAAGTATGCCAGATGCTTTGACGGATCATGACAAAACCCTGAATGAACATGATAATGTGAGAATTTTTGGGGATGATGATTCTGATGCATATGGCTGTTTTTGA 1371 0.3756 MEDRTRLSLFNCVPSFAQGTDILLVHNDTLCLPYLSSLLRQCSFRVTATNQATAAIDMVCEQEGRFKLMMAKANMPDMDTISFLNTLLLKHITVIYIHPTPRLIQEIMNVPYLTYGNIASHLQKFKARCLQDKCNGTKSSSSIQRQCYPGYLTLAAFQNENQSQNHFSVNFPETKGLENFQMQENFSCQHQAELVNYGNQDLEAVVRGAVPDSLMDKNQYDNFGNGFTEDDSAQNSDIQMNPIFGNNFSPHNSAILGELEPCDSMNQSQNLTEDTNILRITGGDSERYDCFRRAKPSAFVGGHELTDQNKTSFTENDSVLRFLGEGYGQNSEMLRNSVLGYSFGVQNSDNYNPSCVKFLKSKIDDLKNQTQNSTEYNDISRFLLEEDCDTTLNSKILRNSVSGNSSGYCNTESVVRSCSVVGGSMPDALTDHDKTLNEHDNVRIFGDDDSDAYGCF 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1517 456 Gene3D - 16 115 - -
Lele52g1517 456 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 100 127 IPR006447 GO:0003677
Lele52g1517 456 PANTHER TWO-COMPONENT RESPONSE REGULATOR 22 96 IPR045279 GO:0009736
Lele52g1517 456 SUPERFAMILY CheY-like 18 97 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1517 Lele-ChrLele52 19186044 19189027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1517 13 99 Response Regulator Gene Family AT1G68210 41.379 1.83e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele52g1517 None None None