Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1516 ATGCACAATAAGGACGCTTGCTCTTCTTCAAATGGAGGAGTCGGCACCAACACCGCTACTTCTTGTCAAATGCAATCCAATGGCGCCATTTATGGGGCCATCTACTCGACTCTGTTTTCTGATAAGCCATCCCTGGCTGGTTCCGACAATGTCGACCTCTCGCTTCACTCGTATGAAGGAAACTCTCCCTTGAAGTACAATGACTTGCCGATTCAGAGTCACCTGTACGATTCCTGTGCCATACAGAATCATCAAGATATGGTAAACCGCCATAGCATGTGCCTAAATCGCCTCGCCGAAACCTCAAAGGAGGTTGAGGCTCTGCGGCAGGAGAACAACCACCTTCGGGCTGTGAACAGGGAACTGAACAACCAATTGAGCCTCCTCATTCAGGTTTCGGTCCAGAATCAATTGGATGGCTCCTCTGGTCATGCAGAAGCGTTTGACGTCATAAATGGGTTTCGTAACTTACGTGTTGAGGACAATTTCGGGGATGGGAAAGAGAACTGTGAAAATTGGAATAAGGACCAAGAGGTTTTGAATGAGAGCCCAACAAGCGTGATTGATAACACTGTCGAAGTGGAAAGGTTCTCGCTGCCCAAGAGTATATCTGTGAGGTCAAATGGGTACTTGAAGGTTGCTCAGTCGGCGGCCGCTGGTGCCGGCAATGGAAATCGCACCAAGGGCGCTGCCCGGCCACACACATCTTTGACTCCAACTGATGTCGTTCAAAAGGTGTATGTGCGTGGAGGGAAGAAGGAGGAGGAGCCTCTGGAGATGGTGGTGTATAACCAAGGCATGTTCAAGACGGAACTGTGCAACAAATGGCAGGAGACGGGGACATGCCCCTATAAGGATCAGTGCCAATTCGCTCACGGAATTGGTGAACTCCGCCCAGTCATCCGCCATCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGCGTGGTATGCCCATATGGGCATAGATGCCATTTCCGCCATGCACTCACTGAACAGGAGAAAGCCATAGCACAGCCTAAGCCCAGGGCAATGAACCTGCACAGATAA 1056 0.5066 MHNKDACSSSNGGVGTNTATSCQMQSNGAIYGAIYSTLFSDKPSLAGSDNVDLSLHSYEGNSPLKYNDLPIQSHLYDSCAIQNHQDMVNRHSMCLNRLAETSKEVEALRQENNHLRAVNRELNNQLSLLIQVSVQNQLDGSSGHAEAFDVINGFRNLRVEDNFGDGKENCENWNKDQEVLNESPTSVIDNTVEVERFSLPKSISVRSNGYLKVAQSAAAGAGNGNRTKGAARPHTSLTPTDVVQKVYVRGGKKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYKDQCQFAHGIGELRPVIRHPRYKTEVCRMVLAGVVCPYGHRCHFRHALTEQEKAIAQPKPRAMNLHR 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1516 351 PANTHER CCCH ZINC FINGER/TIS11-RELATED 84 339 IPR045877 GO:0003729
Lele52g1516 351 ProSiteProfiles Zinc finger C3H1-type profile. 305 333 IPR000571 GO:0046872
Lele52g1516 351 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 268 293 IPR000571 GO:0046872
Lele52g1516 351 ProSiteProfiles Zinc finger C3H1-type profile. 267 295 IPR000571 GO:0046872
Lele52g1516 351 FunFam Zinc finger protein 36, C3H1 type-like 1 301 337 - -
Lele52g1516 351 SUPERFAMILY CCCH zinc finger 264 299 IPR036855 GO:0046872
Lele52g1516 351 SMART c3hfinal6 267 294 IPR000571 GO:0046872
Lele52g1516 351 SMART c3hfinal6 305 332 IPR000571 GO:0046872
Lele52g1516 351 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 22 - -
Lele52g1516 351 FunFam zinc finger CCCH domain-containing protein 15-like 261 300 - -
Lele52g1516 351 Gene3D - 262 300 - -
Lele52g1516 351 Gene3D - 301 337 - -
Lele52g1516 351 Coils Coil 98 125 - -
Lele52g1516 351 SUPERFAMILY CCCH zinc finger 301 335 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1516 Lele-ChrLele52 19177990 19179815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1516 74 340 C3H Transcription Factor Family AT1G68200 53.846 1.76e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele52g1516 zf-CCCH 4.7e-10 CL0537