Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1504 ATGGTGATGCCAGACGGAGCTCTGGCTATAATGAATGGCACTGTGAACGCAGTTGATTCCTCATCCTCACTTCCCAAGACTTGCCTAAAGAACTCGCCGATTCTCATATTCTCTTTCTTCCATAAAGCTATTCGCTCTGAGCTCGATAGCCTCCATCGAGCCGCCTTGGATTTTGCCACTAACCAACATTCTGCTGCCTCTGACATCAAGCCCTTGTTCGACCGTTGTAACTTTATTCATACCATCTATAAGCATCACTGTAATGCGGAGGATGAGGTCATATTTCCTGCATTAGATATACGCGTGAAGAATGTTGCGCGAACATATTCCTTGGAGCATGAGGGAGAGGGTCTTCTTTTTGATCAGTTGTTCAAGCTGCTGAATTCTAATTTGCTAGAGGAAGAGGTCTACCGTAGAGAATTAGCTTCTTGTACTGGTGTACTTCGAACATCAATTAGCCAGCATATGTTTAAGGAAGAGGAGCAGGTCTTCCCCTTGGTTATTGAGAACTTTTCATTGAAAGAGCAGGCGTCACTGGTGTGGCAATTTCTTTGCAGCTTACCAGTTAAAATGATGGCAGAATTTCTTCCCTGGCTTGCCTCATATGTATCATCCGATGAGCATCAGGATATGCTCAAGTGCTTGTGCTCAATAATTCCTGAAGAGAAGCTTCTTCAACAGGTTGTTTTTGGATGGATGGAAGGGGTGAAGATTAAATGTAGAAGCTGCATAAATGATACCAAGGCTCATTGTGAGAATGTTGGGACACATGACTTAACCAATTGTTCTGAAAAGGTGTATTGTGCTTCTGAACCTTCCAAAACTGGAAAAAGGAAATGGATGGAGCTAAGCGTTGATCATACCAGTTCTTATTCATCATGCCCTATAGATGAAATATTATATTGGCATAAGGCCATAAAACAAGAGTTGATTGATTTAACTGAGGCTGTTAGGAAGATACAACTTTCTGGAAAATTTTCTGATTTGTCTGCATTTAATGGGAGGTTGCAGTTCATAAACGAAGTCTGCATCTTTCATAGCATTGCTGAGGACAAAGTTATATTCCCTGCTATAGATGCAGAGATTTCTTTTCTTGATGAGCATGCCGATGGGGAACTTCAGTTTCACAAGCTTAGATCCCTGATGGAAGGAATTCAGAATGCTGAAGTCAACTCATCATCTACTGAGGATTACATGAAGTTGATGTCTCACACTGAACAAATAAAGGACACCATGCTAAAACACTTTGACAATGAGGAAGCTCAGGTTCTACCGCTTGCACGAAAACATTTTAGCCCCCAAAGACAACGTGAATTACTTTATGAAAGTTTGCGCTTAATGCCTTTGAAATTGATCGAATCTGTAATACCGTGGCTGGTTGGATTTCTAAGTGAAGAAGAAGCGAAGTTATTTCTACTGAATATGTATATGGCAGCCCCAACAACCGATTATGCATTAATTACACTGTTTTCTGGTTGGGCATGCAAAAGAAAATCTGGGAACAATGGTTCCTTTTCAAGTAAAACAGGTTTGTGTTCTGCAAGGAAATTATCGGAGATAGAAAACACTAGTCCATCATTCTGCATATGTGTTCCTTCATTCAGTCCCGAGAAAAAATACTCATCCATTCAACAAGATGATGCACATGGAAGTAGTGGACCAGTCAAAAATGGAAAGTTAGAACTGAGGGATGGGAATGATGTTTCTTGCCTCACTGGAACTAGAGAATCTTTTACCTTACCTGATAATCAGACTTGCTGTGTCCCTGGATTAGGGGTAAATGCAAGTCATCTGGGAGTGAATTCATTAGTCCCTGCCAAATCTCTGCGATCCTTATCTAATGGTTCCGTGCCTTCCCTTAACTCTAGTCTATTTGTCTGGGAAACAGATGTAGTCTCTGCTGACAATGGGTTCAAAACCCGACCTATTGATAACATATTTAAATTTCATAAAGCTATTTGTAAAGACTTGGAGTATATAGATGTTGAATCTGGAAAATTGTTTGATTGTGATGAAAATTTCCTGAGGAAGTTCACTGGTAGATTTCGCTTATTGTGGGGTTTGTACAGAGCTCATAGCAATGCAGAGGATGATATAGTATTTCCAGAATTAGAATCCAAAGAAACTCTTCACAATGTGAGCCACTCCTACACTTTGGACCATAAGCAAGAAGAGAAATTATTTGTGGATATTTCATTTGGACTCTCAGAGCTTACTCAATTACATGAATCCTTGAATAATAAGAGTTCATCACAACATCTTACCAGCTTGTACTCTGATTATTCTGTTTGCTCTGATACCATACAAAAGTATAATGAGCTAGTTACAAAGATTCAGGGCATGTGCAAATCTATCAGGGTAACGCTAGATCAACATATCTTCCGTGAGGAACTTGAATTATGGCCACTATTTGACGTTCATTTTTCTGTGGAAGAACAGGATAAAATTGTTGGTCGCATAATTGGTACTACTGGGGCAGAGGTTCTTCAATCAATGCTGCCATGGGTAACTTCTGCTCTCACACAAGAGGAGCAAAACAAAATGATGGACACATGGAAGCAGGCTACCAAGAACACCATGTTCAATGAGTGGCTTAATGAATGGTGGGAAGGGCCCGCTTCAACTTCAAACACAACTACGCCTAGCGACCATGTTTCACTAGGTGCTGATGCCTTTGGCAATTTGGATCATAGCTTTCAATCTTTCAGGCCCGGGTGGAAAGATATATTCAGGATGAACCAGAATGAACTAGAATCAGAAATTAGAAAAGTTTCTCGAGATTCAACTCTTGATCCAAGGAGGAAATCCTATCTTATTCAAAATCTAATGACTAGTCGCTGGATAGCTTCTCAGCAGAAGTCATCTAAAGCAACAACAGATGAATTTGGAAATGGAGATGTACTTAAAAGATCCCCATCGTTTCATGATCCAGAGAAAAATATCTTTGGTTGTGAGCATTACAGAAGAAATTGTAAACTTCTTGCTTCTTGCTGTGGAAAGCTATTCTCCTGCAGGTTTTGCCATGACAAAGTCAGTGACCATTCCATGGATAGGAAGGCTACAACTGAGATGATGTGCATGTGCTGCCTGCAATTACAGCCAATTGGACCAGTTTGTGCAACGCCTTCTTGTGGTGGTCTGTCAATGGCAAAGTACTACTGTAGTATTTGCAAGTTTTTTGATGATGAAAGGGAAGTTTACCATTGCCCTTTCTGCAATATATGCCGTCTGGGGAAAGGACTTGGTGTTGATTCCTTCCATTGCATGCAGTGTAATTGTTGCTTGTCAATGAAATTAGTGGACCACCAGTGCCAGGAAAAAAGCTTAGAAACAAACTGCCCCATCTGCTGTGATTTTTTGTTCACATCTAGTACATCTGTCAGAGCTCTTCCTTGTTGCCATTTCATGCATTCCACTTGCTTTCAGGCATATACTTGTAGTCACTACACCTGTCCAATTTGTCGCAAGTCTTTGGGAGATATGGCGGTTTATTTTGGTATGCTTGATGCTCTGTTGGCTTCTGAGGAACTCCCTGAAGAATATCAGAATCGCCGTCAGGATATACTATGTAATGATTGTGATAAGAAGGGGACTGCACCATTCCATTGGCTTTACCACAAGTGTGGGTTATGCGGGTCTTATAATACAAGGTTAACAGATGCCAAGTGCCATTCATTTCATCCTCTGGTGGAACTGATAGCGTATTTGGTATCGTATCTTTCTCCTTCATTGCCTAATGCAAATAAATAA 3750 0.4064 MVMPDGALAIMNGTVNAVDSSSSLPKTCLKNSPILIFSFFHKAIRSELDSLHRAALDFATNQHSAASDIKPLFDRCNFIHTIYKHHCNAEDEVIFPALDIRVKNVARTYSLEHEGEGLLFDQLFKLLNSNLLEEEVYRRELASCTGVLRTSISQHMFKEEEQVFPLVIENFSLKEQASLVWQFLCSLPVKMMAEFLPWLASYVSSDEHQDMLKCLCSIIPEEKLLQQVVFGWMEGVKIKCRSCINDTKAHCENVGTHDLTNCSEKVYCASEPSKTGKRKWMELSVDHTSSYSSCPIDEILYWHKAIKQELIDLTEAVRKIQLSGKFSDLSAFNGRLQFINEVCIFHSIAEDKVIFPAIDAEISFLDEHADGELQFHKLRSLMEGIQNAEVNSSSTEDYMKLMSHTEQIKDTMLKHFDNEEAQVLPLARKHFSPQRQRELLYESLRLMPLKLIESVIPWLVGFLSEEEAKLFLLNMYMAAPTTDYALITLFSGWACKRKSGNNGSFSSKTGLCSARKLSEIENTSPSFCICVPSFSPEKKYSSIQQDDAHGSSGPVKNGKLELRDGNDVSCLTGTRESFTLPDNQTCCVPGLGVNASHLGVNSLVPAKSLRSLSNGSVPSLNSSLFVWETDVVSADNGFKTRPIDNIFKFHKAICKDLEYIDVESGKLFDCDENFLRKFTGRFRLLWGLYRAHSNAEDDIVFPELESKETLHNVSHSYTLDHKQEEKLFVDISFGLSELTQLHESLNNKSSSQHLTSLYSDYSVCSDTIQKYNELVTKIQGMCKSIRVTLDQHIFREELELWPLFDVHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNKMMDTWKQATKNTMFNEWLNEWWEGPASTSNTTTPSDHVSLGADAFGNLDHSFQSFRPGWKDIFRMNQNELESEIRKVSRDSTLDPRRKSYLIQNLMTSRWIASQQKSSKATTDEFGNGDVLKRSPSFHDPEKNIFGCEHYRRNCKLLASCCGKLFSCRFCHDKVSDHSMDRKATTEMMCMCCLQLQPIGPVCATPSCGGLSMAKYYCSICKFFDDEREVYHCPFCNICRLGKGLGVDSFHCMQCNCCLSMKLVDHQCQEKSLETNCPICCDFLFTSSTSVRALPCCHFMHSTCFQAYTCSHYTCPICRKSLGDMAVYFGMLDALLASEELPEEYQNRRQDILCNDCDKKGTAPFHWLYHKCGLCGSYNTRLTDAKCHSFHPLVELIAYLVSYLSPSLPNANK 1249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1504 1249 CDD Hr-like 646 802 - -
Lele52g1504 1249 SMART ring_2 1113 1154 IPR001841 -
Lele52g1504 1249 Gene3D - 1183 1225 - -
Lele52g1504 1249 SUPERFAMILY RING/U-box 1112 1159 - -
Lele52g1504 1249 SUPERFAMILY CHY zinc finger-like 975 1040 IPR037274 GO:0008270
Lele52g1504 1249 ProSiteProfiles Zinc finger RING-type profile. 1113 1155 IPR001841 -
Lele52g1504 1249 Gene3D nmb1532 protein domain like 638 867 - -
Lele52g1504 1249 ProSiteProfiles Zinc finger CHY-type profile. 977 1046 IPR008913 GO:0008270
Lele52g1504 1249 CDD RING-H2_Pirh2 1112 1155 - -
Lele52g1504 1249 Pfam Hemerythrin HHE cation binding domain 41 167 IPR012312 -
Lele52g1504 1249 Pfam Hemerythrin HHE cation binding domain 296 427 IPR012312 -
Lele52g1504 1249 CDD Hr-like 297 425 - -
Lele52g1504 1249 Pfam CHY zinc finger 984 1059 IPR008913 GO:0008270
Lele52g1504 1249 Pfam Zinc-ribbon 1160 1217 IPR039512 -
Lele52g1504 1249 SUPERFAMILY Zinc hairpin stack 1050 1105 IPR037275 -
Lele52g1504 1249 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1106 1157 IPR013083 -
Lele52g1504 1249 Gene3D nmb1532 protein domain like 32 185 - -
Lele52g1504 1249 Gene3D nmb1532 protein domain like 296 442 - -
Lele52g1504 1249 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 685 1221 - -
Lele52g1504 1249 CDD Hr-like 36 165 - -
Lele52g1504 1249 FunFam Zinc finger protein-related isoform 1 1108 1157 - -
Lele52g1504 1249 ProSiteProfiles Zinc finger CTCHY-type profile. 1049 1112 IPR017921 -
Lele52g1504 1249 Pfam Ring finger domain 1112 1155 IPR001841 -
Lele52g1504 1249 FunFam Zinc finger protein BRUTUS 637 867 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1504 Lele-ChrLele52 19061472 19068893 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1504 32 1222 C2H2 Transcription Factor Family AT3G18290 61.564 0.0 1469