Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1503 ATGTCTCTTTTGAATTGTGCGTCTTCTCCTGTTGATAGGTTGGAGAAGGGGATGGGTTCTAAGATGGAAGGACCGTCTGCCCCAGCAATTCGACGAGATCCATATGAGGTATTGTCTGTGTCAAGGGACGCAAATGATCAGGAGATAAAAACCGCTTACAGAAAGCTCGCTCTCAAGTATCACCCTGACAAAAATACTGACAATCCTGAAGCTTCAGAACTCTTTAAAGAGGTTGCATTTTCATACAGTATCTTGTCTGACCCAGAGAAGAGAAGGCAATATGACAGTGCTGGATTTGAGGCACTTGAAGCAGACAGCATGGACATGGAAGTTGACTTGTCCAATCTTGGAACTGTCAACACAATGTTTGCAGCTTTGTTCAGCAAGCTGGGTGTCCCTATCAAGACCACCATTTCAGCTAATGTTCTTGAAGAAGCTCTGAACGGCACAGTTACAGTCAGACCCCTTCCAATTGGAACATCAGTCAGTGGAAAGGTGGAGAAGCAAGGTGCTCATTTCTTTGGTGTGACAATAAATGAGCGGCAAGCTGAATCAGGGGTTGTAATAAGAGTCACTTCAACTGCACAAAGCAAATTCAAGTTGCTCTACTTTGAACATGATGCAAATGGTGGCTATGGCTTAGCATTGCAGGAAGACAGTGAAAAGACTGGCAGGGTGACATCTGCAGGAATGTATTTCTTACATTTTCAAGTGTACAGATTGGATTCAACCGTGAATGCTTTAGCAATGGCAAAAGATCCTGAAGCTGCCTTCTTCAAAAGGTTGGAAGGTCTTCAACCTTGTGAAGTCTCAGAACTAAAGCCTGGCACTCATATATTTGCAGTTTATGGAGATAACTTCTTTAAGACTGCCACCTATACCATTGAGGCACTTTGTGCAACATCATACGAGGATATCACCCAAAAACTTAAGGACATTGAGGCCAAAATTTTATTAAAAAGGAATGAGCTACGCCAATTTGAAACAGAATATAGAAAGGCATTGGCGCACTATCAAGAAGTGACTGAAATATACACCAAAGAAAAGCAAGCAGTAGACGAGCTTCTGAAGCAGAGAGATGGCATCCATTCTTGCTTCACTGTTTCCAGGCCAATCATTTCTAGTGGGAATGGTAGTAATCTGAGTAATGGAAGTAGTAGCAAGAAATTCTCTGGGGAAGATTCCAAATCAGAGAGCCCTAAGGAAGATGGAAGCTCGGATGGCAAGGATAAATCTGGAAGAAAGAAATGGTTTAATCTCAATCTTAATGGTTCTGGTTTTTCAGTTGAAGCATGA 1296 0.4228 MSLLNCASSPVDRLEKGMGSKMEGPSAPAIRRDPYEVLSVSRDANDQEIKTAYRKLALKYHPDKNTDNPEASELFKEVAFSYSILSDPEKRRQYDSAGFEALEADSMDMEVDLSNLGTVNTMFAALFSKLGVPIKTTISANVLEEALNGTVTVRPLPIGTSVSGKVEKQGAHFFGVTINERQAESGVVIRVTSTAQSKFKLLYFEHDANGGYGLALQEDSEKTGRVTSAGMYFLHFQVYRLDSTVNALAMAKDPEAAFFKRLEGLQPCEVSELKPGTHIFAVYGDNFFKTATYTIEALCATSYEDITQKLKDIEAKILLKRNELRQFETEYRKALAHYQEVTEIYTKEKQAVDELLKQRDGIHSCFTVSRPIISSGNGSNLSNGSSSKKFSGEDSKSESPKEDGSSDGKDKSGRKKWFNLNLNGSGFSVEA 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1503 431 Coils Coil 303 330 - -
Lele52g1503 431 PRINTS DnaJ domain signature 90 109 IPR001623 -
Lele52g1503 431 PRINTS DnaJ domain signature 35 53 IPR001623 -
Lele52g1503 431 PRINTS DnaJ domain signature 53 68 IPR001623 -
Lele52g1503 431 PRINTS DnaJ domain signature 70 90 IPR001623 -
Lele52g1503 431 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 20 424 - -
Lele52g1503 431 CDD DnaJ 33 87 IPR001623 -
Lele52g1503 431 MobiDBLite consensus disorder prediction 1 29 - -
Lele52g1503 431 SUPERFAMILY Chaperone J-domain 32 103 IPR036869 -
Lele52g1503 431 MobiDBLite consensus disorder prediction 377 431 - -
Lele52g1503 431 FunFam Chaperone protein dnaJ 16 18 115 - -
Lele52g1503 431 SMART dnaj_3 32 90 IPR001623 -
Lele52g1503 431 ProSitePatterns Nt-dnaJ domain signature. 75 94 IPR018253 -
Lele52g1503 431 ProSiteProfiles dnaJ domain profile. 33 98 IPR001623 -
Lele52g1503 431 Gene3D DnaJ domain 21 116 IPR036869 -
Lele52g1503 431 MobiDBLite consensus disorder prediction 391 416 - -
Lele52g1503 431 Pfam DnaJ domain 33 95 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1503 Lele-ChrLele52 19040553 19047250 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1503 26 105 C2H2 Transcription Factor Family AT1G74250 40.000 2.44e-11 63.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g1503 52 19040553 19047250 Lele52g1503 52 19040553 19047250 ECH
Lele49g1284 49 8656586 8658610 Lele52g1503 52 19040553 19047250 hybridization
Lele50g1545 50 20662108 20667674 Lele52g1503 52 19040553 19047250 hybridization