LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele52g1497	ATGTCCGCATCTACAAAACCAGAGGCTGGTGGCTCTAATGAAGAAGAAACTGAGCTCAGAAGAGGACCTTGGACTCTCGAAGAAGACAGTTTACTCATACACTGTATCGCTCTTCACGGCGAACGTCGTTGGAACATGTTAGCCAAAACTGCAGGATTGAAGAGAACAGGAAAGAGTTGCAGGTTTAGGTGGCTCAACTACTTGAAACCAGACATCAAGAGAGGGAATTTAACTCCACAAGAGCAACTCTTGATCCTTGAACTCCATTCCAAATGGGGCAACAAGTGGTCGAAAATTGCTCAGCATCTGCCAGGCAGAACAGACAACGAGATTAAGAATTATTGGAGGACAAGAAATCAGAAACAGGCACGCCAGCTCAACATTGAATCTGGTAGTGACAGATTCATCGATGCTGTTCGATGTTTCAGGATGCCTAGGTTGTTGCAAAAGATGGAGCAAACCTCTTCATCCTCCTCTTCCTCTTCCTCTGTTATAAACATCAACTCTGAGAACTCTGCAATTCATGTCCCTTCCCTGTCTCCTCCACAAGGAGAATTCACAGATATTGCAGCAAATCATACCACCACCACCACCAACAACAATCTTAATTTCCCAGATCATTATCCCCTGCAATTACAAGTGCCGTTTGAAATATCAGAAAACCAGACAAGTATTTATCTTCCTCAAGCGTCGGAGAACTACAACAATACTGTTTGCTTCAATAATCCAGTTGAAGATCATAGTCATGGTATGGAAGGGCTAAACTTAGAGCCATTTTCAAGAAGTGAAAGTAATTATGGGATTTCCCAGTTTGATTATTGTCAGAGTTCAGAAAGTGAATGGGGGTCAAGCAGCATGGGAGAAGAATATTCTTTGTGGAATTTGGATGAAATGTGA	897	0.4259	MSASTKPEAGGSNEEETELRRGPWTLEEDSLLIHCIALHGERRWNMLAKTAGLKRTGKSCRFRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNKWSKIAQHLPGRTDNEIKNYWRTRNQKQARQLNIESGSDRFIDAVRCFRMPRLLQKMEQTSSSSSSSSSVININSENSAIHVPSLSPPQGEFTDIAANHTTTTTNNNLNFPDHYPLQLQVPFEISENQTSIYLPQASENYNNTVCFNNPVEDHSHGMEGLNLEPFSRSESNYGISQFDYCQSSESEWGSSSMGEEYSLWNLDEM	298

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele52g1497	298	Gene3D	-	18	74	-	-
	Lele52g1497	298	CDD	SANT	23	68	IPR001005	-
	Lele52g1497	298	CDD	SANT	78	117	IPR001005	-
	Lele52g1497	298	ProSiteProfiles	Myb-like domain profile.	16	68	IPR001005	-
	Lele52g1497	298	SMART	sant	73	121	IPR001005	-
	Lele52g1497	298	SMART	sant	20	70	IPR001005	-
	Lele52g1497	298	ProSiteProfiles	Myb-like domain profile.	69	119	IPR001005	-
	Lele52g1497	298	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	18	68	IPR017930	-
	Lele52g1497	298	MobiDBLite	consensus disorder prediction	1	20	-	-
	Lele52g1497	298	FunFam	MYB transcription factor	77	119	-	-
	Lele52g1497	298	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	15	193	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Lele52g1497	298	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	69	123	IPR017930	-
	Lele52g1497	298	SUPERFAMILY	Homeodomain-like	19	115	IPR009057	-
	Lele52g1497	298	FunFam	Myb transcription factor	21	73	-	-
	Lele52g1497	298	Gene3D	-	77	118	-	-
	Lele52g1497	298	Pfam	Myb-like DNA-binding domain	21	68	IPR001005	-
	Lele52g1497	298	Pfam	Myb-like DNA-binding domain	74	117	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele52g1497	Lele-ChrLele52	18959219	18960336	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele52g1497	16	160	MYB Transcription Factor Family	AT1G68320	78.621	1.07e-80	244

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele52g1497		Myb_DNA-binding	3.9e-14	CL0123