Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1488 ATGAGACTTCCTTTCTTCTCTAATCACTGTTCCCACCATTGTTCCTCCATTCAATTTTACCATTCATCTCTTACTCTGTTTTCTTCTTCTACCAGAAGAAACCGAGGGCCCCGCATGGATGCTGCCCCCGTCTTCAACCGCAACCGCCGCAAAGAGAAGGTGATTGTCATAATGGGAGCTACCGGTGCCGGAAAATCAAGCCTCTCCATTGACCTCGCAACCCGTTTCCCCTTCTTCGAAATCATTAACTCAGATAAAATGCAGGTGTACAGAGGCCTCGACATCACCACCAACAAGATCCCCATTGACGAGCGCAACGGCATCCCTCATCATCTCCTCGGCGACGTCGACCCAGAAAACGGAGACTTCACGCCTTTAAATTTTCGCTTGCGCGCAGGCTCTATCATCTCCGACATTACTTCCAGGAGGAAGCTTCCCATTGTCGTTGGTGGGTCTAACTCGTTCGTTCACGCTCTTCTCGCTGACCGATTCGACCCCTATGTAAATGTATTCGATGGGTCATCGTCGTCGTCGACTTTGATCTCTTCGGAGTTGAGATACGAGTGCTGCTTTTTGTGGGTGGACGTGGAATTTCCGTTGTTGTCGGATTACTTAATGAAGCGAGTCGACGACATGCTCGACTTGGGAATGGTGGAAGAGTTAGCCGAGTTCTTCGACCCGGACGCTGACGATTTAGAAGATGACTCGGAGGACCGGACGGGATTGAGAAAAGCCATCAGCGTGCCGGAGTTCGACCGGTATTTCAAGAGATACCCGCCGCCGCGAGGGCTGAGCGCGGAGTGTAGAAGCGAGGATGATCGAGTACGGAAGGGTGCATACGAAGAGGCGGTGAGGGCGATAAAGGACAACACGTGTCGGCTAGTGAAGAAACAGATAGAGAAAATCTTGCGGCTAAGATGGTCGGGGTGGGACCTACGGAGGGTAGACGCGACGGAGGTGTTCAGGGCGAAGTTGGGCGGAGACGGCGGCGAGAGGTGGTCGGATATTTGGGAGAGGGAGGTGCTTGAGCCAAGCGTGAAGATTGTGAATAGCTTCTTGCGGGAGTAG 1068 0.5262 MRLPFFSNHCSHHCSSIQFYHSSLTLFSSSTRRNRGPRMDAAPVFNRNRRKEKVIVIMGATGAGKSSLSIDLATRFPFFEIINSDKMQVYRGLDITTNKIPIDERNGIPHHLLGDVDPENGDFTPLNFRLRAGSIISDITSRRKLPIVVGGSNSFVHALLADRFDPYVNVFDGSSSSSTLISSELRYECCFLWVDVEFPLLSDYLMKRVDDMLDLGMVEELAEFFDPDADDLEDDSEDRTGLRKAISVPEFDRYFKRYPPPRGLSAECRSEDDRVRKGAYEEAVRAIKDNTCRLVKKQIEKILRLRWSGWDLRRVDATEVFRAKLGGDGGERWSDIWEREVLEPSVKIVNSFLRE 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1488 355 Gene3D - 51 353 IPR027417 -
Lele52g1488 355 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 51 353 IPR039657 -
Lele52g1488 355 Pfam IPP transferase 88 163 - -
Lele52g1488 355 Pfam IPP transferase 184 299 - -
Lele52g1488 355 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 198 312 - -
Lele52g1488 355 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 51 234 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1488 Lele-ChrLele52 18896630 18897697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1488 170 353 C2H2 Transcription Factor Family AT2G27760 27.536 2.19e-13 68.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g1488 52 18896630 18897697 Lele52g1488 52 18896630 18897697 ECH
Lele49g1296 49 8778234 8779304 Lele52g1488 52 18896630 18897697 hybridization
Lele50g1533 50 20538862 20539815 Lele52g1488 52 18896630 18897697 hybridization