Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele52g1474 | ATGCCTGAACCTCGGAATCAACCGTCAAATCAGACGATGAAGATGAACAATTTTACCAAGAAGATGAAGCAGAAGCAAATTCCCATTCCTTCGAGAAAGCTTCGCATAATCTGTGACGACCCTTATGCGACAGATTCGTCTTCAAGCGAAAACGAAGAAGAACGACGACGGCCGAGGAAGATGAAACGAATCGTTCGTGAGCTCACTCTTCCTCTTTCTTCTGCTATGTCTAAATCCACTGAAACTGAAAGCTCATTTCAGGAGAGCAACAACGGAGTCATCATCAAGACTTGTTCCTCCTTCAAGTTCGCAGCAGATTATCAAACCCAGAGCAAGAAGAGGGTTTTGACCAAAACCCCATCAACGAAAAGCTCGTCTTCTTCATCGAGATTTAGAGGCGTTCGACAGAGAAAATGGGGGAAATGGGCTGCTGAAATTCGTGATCCATTTAAAGGTGTTCGCATCTGGCTTGGTACTTATAATACTGCACAGGAAGCTTCTCAAGCTTATGAAGCGAAGAAGATGGAGTTTGAAGCCATGGCTAAAGCTCAAGCTCAGGCTCAATCTGAGAAGAGTTACGTTGTTTCTTCTTCAGCTCAAGTTGCTGCTTCTGTGTCAGAAGATTCTGAGAGTGTCTTCTCTCAAACATCACCTTCCTCTGTGCTTGAACTCGACACCTCAACTTCCAAATCCACTGAAGATGGCGATGCCAACATCGTCCATAGCAGTTCAAGCGAAGAACAAAAAGAAGAAAATCAACCAGAACAACAACAAGAAGCAGCAGGAACTATAACTATGGAGGCTGAAGATTTTGGGAATGAATTGGCAGAACTCCAAATCCCAGATTTGAGCTTCCTGAACGAGCCGCCAGTGATACAAGCAGCAGCGACAACAACAACAACATCATCTGCAGCAGCAGCAGTAGATGTTTCAGTTTCAGTTTCAGACATGAATCTGGGATTCGATCTGGACTGGGTAATGCTCGAGGATTTTGGTCAGGGTTTGGAAGATCCGTTTGGTTTGGACGACATGCAAATATGTGGGTTTGATGAGGATGACATGAATGCAAGTGAGCTGCCTGATTTTGATTTTGATGTGTGTGCTGATGAGTTCGCTGGTTGGACTGAGGGGCCCCTCAATATACCGTGCGTATAA | 1155 | 0.4485 | MPEPRNQPSNQTMKMNNFTKKMKQKQIPIPSRKLRIICDDPYATDSSSSENEEERRRPRKMKRIVRELTLPLSSAMSKSTETESSFQESNNGVIIKTCSSFKFAADYQTQSKKRVLTKTPSTKSSSSSSRFRGVRQRKWGKWAAEIRDPFKGVRIWLGTYNTAQEASQAYEAKKMEFEAMAKAQAQAQSEKSYVVSSSAQVAASVSEDSESVFSQTSPSSVLELDTSTSKSTEDGDANIVHSSSSEEQKEENQPEQQQEAAGTITMEAEDFGNELAELQIPDLSFLNEPPVIQAAATTTTTSSAAAAVDVSVSVSDMNLGFDLDWVMLEDFGQGLEDPFGLDDMQICGFDEDDMNASELPDFDFDVCADEFAGWTEGPLNIPCV | 384 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele52g1474 | 384 | Gene3D | AP2/ERF domain | 129 | 185 | IPR036955 | GO:0003700|GO:0006355 | |
Lele52g1474 | 384 | SUPERFAMILY | DNA-binding domain | 129 | 177 | IPR016177 | GO:0003677 | |
Lele52g1474 | 384 | Pfam | AP2 domain | 129 | 179 | IPR001471 | GO:0003700|GO:0006355 | |
Lele52g1474 | 384 | MobiDBLite | consensus disorder prediction | 1 | 64 | - | - | |
Lele52g1474 | 384 | MobiDBLite | consensus disorder prediction | 48 | 64 | - | - | |
Lele52g1474 | 384 | PRINTS | Ethylene responsive element binding protein signature | 131 | 142 | IPR001471 | GO:0003700|GO:0006355 | |
Lele52g1474 | 384 | PRINTS | Ethylene responsive element binding protein signature | 153 | 169 | IPR001471 | GO:0003700|GO:0006355 | |
Lele52g1474 | 384 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Lele52g1474 | 384 | MobiDBLite | consensus disorder prediction | 205 | 242 | - | - | |
Lele52g1474 | 384 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 32 | 264 | - | - | |
Lele52g1474 | 384 | CDD | AP2 | 130 | 172 | IPR001471 | GO:0003700|GO:0006355 | |
Lele52g1474 | 384 | ProSiteProfiles | AP2/ERF domain profile. | 130 | 188 | IPR001471 | GO:0003700|GO:0006355 | |
Lele52g1474 | 384 | SMART | rav1_2 | 130 | 192 | IPR001471 | GO:0003700|GO:0006355 | |
Lele52g1474 | 384 | MobiDBLite | consensus disorder prediction | 205 | 260 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele52g1474 | Lele-ChrLele52 | 18733428 | 18734582 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele52g1474 | 30 | 383 | AP2-EREBP Transcription Factor Family | AT1G68550 | 35.068 | 2.55e-38 | 138 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2/ERF-ERF | Lele52g1474 | AP2 | 2.7e-10 | CL0081 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lele52g1474 | 52 | 18733428 | 18734582 | Lele52g1474 | 52 | 18733428 | 18734582 | ECH | |
Lele49g1309 | 49 | 8924375 | 8925520 | Lele52g1474 | 52 | 18733428 | 18734582 | hybridization | |
Lele50g1521 | 50 | 20353505 | 20354632 | Lele52g1474 | 52 | 18733428 | 18734582 | hybridization |