Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1474 ATGCCTGAACCTCGGAATCAACCGTCAAATCAGACGATGAAGATGAACAATTTTACCAAGAAGATGAAGCAGAAGCAAATTCCCATTCCTTCGAGAAAGCTTCGCATAATCTGTGACGACCCTTATGCGACAGATTCGTCTTCAAGCGAAAACGAAGAAGAACGACGACGGCCGAGGAAGATGAAACGAATCGTTCGTGAGCTCACTCTTCCTCTTTCTTCTGCTATGTCTAAATCCACTGAAACTGAAAGCTCATTTCAGGAGAGCAACAACGGAGTCATCATCAAGACTTGTTCCTCCTTCAAGTTCGCAGCAGATTATCAAACCCAGAGCAAGAAGAGGGTTTTGACCAAAACCCCATCAACGAAAAGCTCGTCTTCTTCATCGAGATTTAGAGGCGTTCGACAGAGAAAATGGGGGAAATGGGCTGCTGAAATTCGTGATCCATTTAAAGGTGTTCGCATCTGGCTTGGTACTTATAATACTGCACAGGAAGCTTCTCAAGCTTATGAAGCGAAGAAGATGGAGTTTGAAGCCATGGCTAAAGCTCAAGCTCAGGCTCAATCTGAGAAGAGTTACGTTGTTTCTTCTTCAGCTCAAGTTGCTGCTTCTGTGTCAGAAGATTCTGAGAGTGTCTTCTCTCAAACATCACCTTCCTCTGTGCTTGAACTCGACACCTCAACTTCCAAATCCACTGAAGATGGCGATGCCAACATCGTCCATAGCAGTTCAAGCGAAGAACAAAAAGAAGAAAATCAACCAGAACAACAACAAGAAGCAGCAGGAACTATAACTATGGAGGCTGAAGATTTTGGGAATGAATTGGCAGAACTCCAAATCCCAGATTTGAGCTTCCTGAACGAGCCGCCAGTGATACAAGCAGCAGCGACAACAACAACAACATCATCTGCAGCAGCAGCAGTAGATGTTTCAGTTTCAGTTTCAGACATGAATCTGGGATTCGATCTGGACTGGGTAATGCTCGAGGATTTTGGTCAGGGTTTGGAAGATCCGTTTGGTTTGGACGACATGCAAATATGTGGGTTTGATGAGGATGACATGAATGCAAGTGAGCTGCCTGATTTTGATTTTGATGTGTGTGCTGATGAGTTCGCTGGTTGGACTGAGGGGCCCCTCAATATACCGTGCGTATAA 1155 0.4485 MPEPRNQPSNQTMKMNNFTKKMKQKQIPIPSRKLRIICDDPYATDSSSSENEEERRRPRKMKRIVRELTLPLSSAMSKSTETESSFQESNNGVIIKTCSSFKFAADYQTQSKKRVLTKTPSTKSSSSSSRFRGVRQRKWGKWAAEIRDPFKGVRIWLGTYNTAQEASQAYEAKKMEFEAMAKAQAQAQSEKSYVVSSSAQVAASVSEDSESVFSQTSPSSVLELDTSTSKSTEDGDANIVHSSSSEEQKEENQPEQQQEAAGTITMEAEDFGNELAELQIPDLSFLNEPPVIQAAATTTTTSSAAAAVDVSVSVSDMNLGFDLDWVMLEDFGQGLEDPFGLDDMQICGFDEDDMNASELPDFDFDVCADEFAGWTEGPLNIPCV 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1474 384 Gene3D AP2/ERF domain 129 185 IPR036955 GO:0003700|GO:0006355
Lele52g1474 384 SUPERFAMILY DNA-binding domain 129 177 IPR016177 GO:0003677
Lele52g1474 384 Pfam AP2 domain 129 179 IPR001471 GO:0003700|GO:0006355
Lele52g1474 384 MobiDBLite consensus disorder prediction 1 64 - -
Lele52g1474 384 MobiDBLite consensus disorder prediction 48 64 - -
Lele52g1474 384 PRINTS Ethylene responsive element binding protein signature 131 142 IPR001471 GO:0003700|GO:0006355
Lele52g1474 384 PRINTS Ethylene responsive element binding protein signature 153 169 IPR001471 GO:0003700|GO:0006355
Lele52g1474 384 MobiDBLite consensus disorder prediction 1 24 - -
Lele52g1474 384 MobiDBLite consensus disorder prediction 205 242 - -
Lele52g1474 384 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 264 - -
Lele52g1474 384 CDD AP2 130 172 IPR001471 GO:0003700|GO:0006355
Lele52g1474 384 ProSiteProfiles AP2/ERF domain profile. 130 188 IPR001471 GO:0003700|GO:0006355
Lele52g1474 384 SMART rav1_2 130 192 IPR001471 GO:0003700|GO:0006355
Lele52g1474 384 MobiDBLite consensus disorder prediction 205 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1474 Lele-ChrLele52 18733428 18734582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1474 30 383 AP2-EREBP Transcription Factor Family AT1G68550 35.068 2.55e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele52g1474 AP2 2.7e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g1474 52 18733428 18734582 Lele52g1474 52 18733428 18734582 ECH
Lele49g1309 49 8924375 8925520 Lele52g1474 52 18733428 18734582 hybridization
Lele50g1521 50 20353505 20354632 Lele52g1474 52 18733428 18734582 hybridization