Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele52g1470 ATGAAGATTTTCGTGAAGACTCTGAAAGGCTCTCACTTCGAAATTGAAGTGAAGCCAGAAGACCCGGTTATTGAAGTGAAGAAAAAAATAGAAACTGCTCAGGGTGCGGATGTCTATCCCGCTGCACAACAAATGCTTATCCATCAAGGGAAGGTTCTGAAAGATGGCACCACCTTGGAGGAAAGTAAAGTAGTTGAAAATAGTTTTGTCGTAATTATGCTTTCTAAGAGCAAAAGCTCATCTGGTGACGGTTCTACTACTTCAGCTGCACCTTCAACCAAGACCCCAGCAACAAGTGCTGCTCCCACCTCCACTTCTGTTTCAAGTTCAACCACACCTCAAGCTCCTGCTGCAGCGCCTGCTCCTTCTCCTTCTCCTGCACCAGCACCTACACCTGCTCGTGCTCGTGCTCCTGTTACTTCAGGCACTGCTGTGTCAGAGTCTGATATCTATGGACAGGCTGCATCTAACCTTGTAGCTGGAAGCAACTTGGAGGAAACCATTCAACAAATTCTTGATGTGGGTGGAGGGAGCTGGGATAGGGATACTGTAGTCCGTGCTCTACGTGCTGCTTACAATAATCCTGAGAGAGCCGTTGATTATTTGTACACAGGTATTCCAGAACAAGCTGAAGCTCCTCCTGTGGCCCGAGTGCCTGCAAGTCCACAAACTGCAAATCCTCCAGCAGCAGCTCCACAAGCTGCACAGCCAGCACCTGCTCCTACAAGTGGACCAAATGCTAATCCCCTAGACCTTTTCCCCCAGGGCCTTCCCAATGTTGGTTCTGGTGCTGCTGGTGCCGGCACCCTAGATTTTCTGCGCAATAGTCAGCAGTTCCAAGCCTTGCGAGCCATGGTACAGGCAAATCCACAAATACTCCAGCCTATGCTTCAAGAGCTCGGGAAACAAAATCCTCATCTTATGAGATTGATTCAAGAGCACCAGACTGACTTCCTTCGCCTGATAAATGAACCAGCGGAAGGTGGTGACGGGAACATATTAGGGCAGCTGGCTGCTGCCATGCCACAACAAATAGCTGTCACCCCCGAGGAGCGACAAGCAATTGAACGACTTGAAGCAATGGGTTTTGATCGTGCACTGGTGTTGGAGGTATATTTTGCGTGCAACAAAAATGAGGAACTGGCTGCCAACTACCTTTTAGATCACATGCATGAGTTTGAGGAATGA 1188 0.4882 MKIFVKTLKGSHFEIEVKPEDPVIEVKKKIETAQGADVYPAAQQMLIHQGKVLKDGTTLEESKVVENSFVVIMLSKSKSSSGDGSTTSAAPSTKTPATSAAPTSTSVSSSTTPQAPAAAPAPSPSPAPAPTPARARAPVTSGTAVSESDIYGQAASNLVAGSNLEETIQQILDVGGGSWDRDTVVRALRAAYNNPERAVDYLYTGIPEQAEAPPVARVPASPQTANPPAAAPQAAQPAPAPTSGPNANPLDLFPQGLPNVGSGAAGAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPAEGGDGNILGQLAAAMPQQIAVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFEE 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele52g1470 395 FunFam UV excision repair protein RAD23 homolog 342 390 - -
Lele52g1470 395 Pfam XPC-binding domain 270 326 IPR015360 GO:0003684|GO:0006289|GO:0043161
Lele52g1470 395 Pfam UBA/TS-N domain 351 386 IPR015940 -
Lele52g1470 395 Pfam UBA/TS-N domain 164 202 IPR015940 -
Lele52g1470 395 SMART ubq_7 1 75 IPR000626 GO:0005515
Lele52g1470 395 CDD UBA1_Rad23_plant 158 207 - -
Lele52g1470 395 SUPERFAMILY UBA-like 161 213 IPR009060 GO:0005515
Lele52g1470 395 TIGRFAM rad23: UV excision repair protein Rad23 1 394 IPR004806 GO:0006289
Lele52g1470 395 SUPERFAMILY UBA-like 330 393 IPR009060 GO:0005515
Lele52g1470 395 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Lele52g1470 395 FunFam UV excision repair protein RAD23 1 80 - -
Lele52g1470 395 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 348 389 IPR015940 -
Lele52g1470 395 MobiDBLite consensus disorder prediction 77 146 - -
Lele52g1470 395 MobiDBLite consensus disorder prediction 117 133 - -
Lele52g1470 395 Gene3D - 1 80 - -
Lele52g1470 395 CDD Ubl_Rad23 1 74 - -
Lele52g1470 395 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Lele52g1470 395 MobiDBLite consensus disorder prediction 77 116 - -
Lele52g1470 395 PRINTS DNA repair protein Rad23 signature 377 392 IPR004806 GO:0006289
Lele52g1470 395 PRINTS DNA repair protein Rad23 signature 296 318 IPR004806 GO:0006289
Lele52g1470 395 PRINTS DNA repair protein Rad23 signature 345 361 IPR004806 GO:0006289
Lele52g1470 395 PRINTS DNA repair protein Rad23 signature 362 376 IPR004806 GO:0006289
Lele52g1470 395 MobiDBLite consensus disorder prediction 213 252 - -
Lele52g1470 395 Gene3D - 342 390 - -
Lele52g1470 395 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Lele52g1470 395 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 384 - -
Lele52g1470 395 SMART uba_6 164 204 IPR015940 -
Lele52g1470 395 SMART uba_6 351 388 IPR015940 -
Lele52g1470 395 FunFam UV excision repair protein RAD23 B 261 326 - -
Lele52g1470 395 SUPERFAMILY XPC-binding domain 266 332 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lele52g1470 395 Gene3D - 261 326 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lele52g1470 395 FunFam UV excision repair protein RAD23 homolog 157 207 - -
Lele52g1470 395 SMART CBM 268 311 IPR006636 -
Lele52g1470 395 Gene3D - 157 207 - -
Lele52g1470 395 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 162 205 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele52g1470 Lele-ChrLele52 18695158 18700531 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele52g1470 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.541 6.92e-09 52.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele52g1470 52 18695158 18700531 Lele52g1470 52 18695158 18700531 ECH
Lele49g1312 49 8955875 8961276 Lele52g1470 52 18695158 18700531 hybridization
Lele50g1517 50 20311337 20317261 Lele52g1470 52 18695158 18700531 hybridization